View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_83 (Length: 323)
Name: NF10201A_low_83
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 50442336 - 50442045
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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| T |
50442336 |
gattgaatatgcttcgcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
50442237 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcaatatgtaactttagattgcactg |
206 |
Q |
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| T |
50442236 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcaatatgtaactttagattgcactg |
50442137 |
T |
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| Q |
207 |
tttcaactttatatctccaaacattaataaaagtttaaatttctagcttggttaagagatttttatctgtatgtattcaatttcttaaggaa |
298 |
Q |
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| T |
50442136 |
tttcaactttatatcgccaaacattaataaaagtttaaatttctagcttggttaagagatttttatcagtatgtattcaatttcttaaggaa |
50442045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 50447237 - 50447057
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||| |||| |
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| T |
50447237 |
gattgaatatgcttctcaagtaggaattgagcatctgattcttggctcttcagcaaaaactagtttgcacaagtatgcatccattttcctaagtagcatc |
50447138 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcaatatgtaa |
191 |
Q |
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| T |
50447137 |
acattttgcaaattttacttctagcttatagtttctta----ccatcccttctgagaattaacacaaacaataatcaacatgtaa |
50447057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 50422104 - 50421965
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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|||||||||||| |||| | | |||||||||||| || |||||||||| ||||||| | ||| |||||| ||||| |||| |||| | |||||| ||| |
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| T |
50422104 |
gattgaatatgcctctcggacgggaattgagcatttggttcttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcata |
50422005 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtacc |
146 |
Q |
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||| || |||| ||||||| |||||||||||||| |||| |
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| T |
50422004 |
gcatgttgcaaagtttacttttagcttctagttttctacc |
50421965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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