View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_84 (Length: 320)
Name: NF10201A_low_84
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_84 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 267
Target Start/End: Complemental strand, 12933984 - 12933823
Alignment:
| Q |
106 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
204 |
Q |
| |
|
||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || |
|
|
| T |
12933984 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
12933885 |
T |
|
| Q |
205 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcag |
267 |
Q |
| |
|
|| |||||||||||||||| |||| || ||||| || || |||||||||||||||||||||| |
|
|
| T |
12933884 |
ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcag |
12933823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
219 |
ggttgctccatataaatctcctcttccaaatctccatg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 267
Target Start/End: Original strand, 28608621 - 28608782
Alignment:
| Q |
106 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
204 |
Q |
| |
|
||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || |
|
|
| T |
28608621 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
28608720 |
T |
|
| Q |
205 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcag |
267 |
Q |
| |
|
||| ||||||||||||||| |||| || ||||| || || |||||||||||||||||||||| |
|
|
| T |
28608721 |
ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcag |
28608782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 14177231 - 14177093
Alignment:
| Q |
129 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
227 |
Q |
| |
|
||||| || |||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || || |||||||||||||||| || |
|
|
| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
|
| Q |
228 |
atataaatctcctcttccaaatctccatgaagaaatgcag |
267 |
Q |
| |
|
|| || ||||| || || |||||||||||||||||||||| |
|
|
| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaatgcag |
14177093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 20706234 - 20706173
Alignment:
| Q |
218 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagctttaacatctaa |
280 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcatttttaatatctaa |
20706173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University