View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_87 (Length: 316)

Name: NF10201A_low_87
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_87
NF10201A_low_87
[»] chr7 (2 HSPs)
chr7 (7-300)||(8156580-8156876)
chr7 (174-300)||(8163088-8163214)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 8156580 - 8156876
Alignment:
Q  7 ggatgtgtttactgtgcttttttaatggaagaggccttctatatactaatgagtcctatcatatatggctacaaacaaattattgataaaatcagtggtt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8156580 ggatgtgtttactgtgcttttttaatggaagaggccttctatatactaatgaatcctatcatatatggctacaaacaaattattgataaaatcagtggtt 8156679  T
Q  107 caaatgaactaatatagaaaaaagagttatattctttcattctttattaacttggtgcaattatttaaa---tgtagatacatgatctccacaatagtaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||    
T  8156680 caaatgaactaatatagaaaaaagagttatattctttcattctttattaacttggtacaattatttaaatgttgtagatacatgatctccacaatagtaa 8156779  T
Q  204 ttgggtttgcatacaaccttcttcaaatggcactttcaattttcaccgtggtctcaggaaatcgtgtattaagtggtgatggaggctatatgtttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8156780 ttgggtttgcatacaaccttcttcaaatggcactttcaattttcaccgtggtctcaggaaatcgtgtattaagtggtgatggaggctatatgtttga 8156876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 300
Target Start/End: Original strand, 8163088 - 8163214
Alignment:
Q  174 aatgtagatacatgatctccacaatagtaattgggtttgcatacaaccttcttcaaatggcactttcaattttcaccgtggtctcaggaaatcgtgtatt 273  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||    || ||||||||||||||||||||||  ||||| |||||||||||||||||    
T  8163088 aatgtagatacatgctctcgacaatagtcattgggtttgcatacaattgcctacaaatggcactttcaattttcagtgtggtatcaggaaatcgtgtatt 8163187  T
Q  274 aagtggtgatggaggctatatgtttga 300  Q
    || |||||  | |||||||| ||||||    
T  8163188 aaatggtggcgcaggctataagtttga 8163214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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