View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_97 (Length: 307)

Name: NF10201A_low_97
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_97
NF10201A_low_97
[»] chr2 (8 HSPs)
chr2 (6-307)||(2466650-2466930)
chr2 (61-307)||(2462602-2462830)
chr2 (186-307)||(3063274-3063395)
chr2 (176-307)||(2458026-2458154)
chr2 (179-307)||(2469975-2470100)
chr2 (182-307)||(2474246-2474368)
chr2 (213-289)||(2471017-2471090)
chr2 (251-307)||(2486520-2486576)
[»] chr4 (1 HSPs)
chr4 (186-307)||(18015925-18016046)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 307
Target Start/End: Complemental strand, 2466930 - 2466650
Alignment:
Q  6 acattattttattatactccaataatacgagaaatgtcatatgataactataaacataatgagtcaggaactcattacgtacgtacgtttaccctgccat 105  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2466930 acattattttattatactccaataatatgagaaatatcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat 2466831  T
Q  106 ttatttatttatttatccatcatatggtatggtttctatatatagcttaaattgaaacattctattaagcatgcacttagtatggcttttcaccaacata 205  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||                |||||||||||||||||||||||   |    
T  2466830 ttatttatttatttatccatcatatggtatggtttcta--tatagcttaaagtgaaa----------------cacttagtatggcttttcaccaa---a 2466752  T
Q  206 gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466751 gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc 2466652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 307
Target Start/End: Complemental strand, 2462830 - 2462602
Alignment:
Q  61 ataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaattga 160  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||    
T  2462830 ataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagtga 2462733  T
Q  161 aacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacat 260  Q
    ||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2462732 aaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacat 2462649  T
Q  261 ctcactttggcacatccaacacgttgtgagtttctccaaacaacctg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2462648 ctcactttggcacatccaacacgttgtgagtttctccaaacaacctg 2462602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 186 - 307
Target Start/End: Original strand, 3063274 - 3063395
Alignment:
Q  186 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3063274 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 3063373  T
Q  286 gtgagtttctccaaacaacctg 307  Q
    ||||||||||||||||||||||    
T  3063374 gtgagtttctccaaacaacctg 3063395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 2458154 - 2458026
Alignment:
Q  176 atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat 275  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||| |||| ||||||   |||||| ||||||||||||    
T  2458154 atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat 2458058  T
Q  276 ccaacacgttgtgagtttctccaaacaacctg 307  Q
    |||| ||| | || ||||||||||||||||||    
T  2458057 ccaatacgctttgtgtttctccaaacaacctg 2458026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 2470100 - 2469975
Alignment:
Q  179 cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca 278  Q
    ||||||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||  |||||   |||| |||||||||||||||||    
T  2470100 cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca 2470004  T
Q  279 acacgttgtgagtttctccaaacaacctg 307  Q
    |  ||||||| |||||||||||| |||||    
T  2470003 atccgttgtgtgtttctccaaaccacctg 2469975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 307
Target Start/End: Complemental strand, 2474368 - 2474246
Alignment:
Q  182 ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca 281  Q
    |||||||||  |||| |||| ||||||||| || |||||||||||||| ||||||||||||||||    |||||||||| |||||||||||||||||| |    
T  2474368 ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctc---cattatcacatttcactttggcacatccaata 2474272  T
Q  282 cgttgtgagtttctccaaacaacctg 307  Q
    |||| || |||||||||||| |||||    
T  2474271 cgttttgtgtttctccaaaccacctg 2474246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
Q  213 ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga 289  Q
    |||||||| |||||||| ||||||||||| |||| |||||   |||||||||||||| |||||||||||||||||||    
T  2471090 ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga 2471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 2486576 - 2486520
Alignment:
Q  251 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctg 307  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  ||||||||||||    
T  2486576 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctg 2486520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 18016046 - 18015925
Alignment:
Q  186 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18016046 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 18015947  T
Q  286 gtgagtttctccaaacaacctg 307  Q
    ||||||||||||||||||||||    
T  18015946 gtgagtttctccaaacaacctg 18015925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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