View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_98 (Length: 306)
Name: NF10201A_low_98
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_98 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 150 - 300
Target Start/End: Complemental strand, 7246474 - 7246324
Alignment:
| Q |
150 |
tctccttgaacaacaacagcagcagcataaactcaccttcgtctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7246474 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
7246375 |
T |
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| Q |
250 |
atcctatcaaaactcttctttaaacccttactattactctcaatcaattac |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7246374 |
atcctaccaaaactcttctttaaacccttactattactctcaatcaattac |
7246324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7246623 - 7246532
Alignment:
| Q |
1 |
ggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaactagtagtttcttctt |
92 |
Q |
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| T |
7246623 |
ggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaactagtagtttcttctt |
7246532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 13137278 - 13137222
Alignment:
| Q |
20 |
aagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
76 |
Q |
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| T |
13137278 |
aagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttgtggaa |
13137222 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 52052001 - 52052075
Alignment:
| Q |
2 |
gaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
76 |
Q |
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| T |
52052001 |
gaagcatatccagattcaaagtactgtgaaaggcacatgcatagagggaaaaaccgttcaagaaagcctgtggaa |
52052075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 18199875 - 18199801
Alignment:
| Q |
2 |
gaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
76 |
Q |
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| T |
18199875 |
gaagcatatccagattctaaatactgtgaaagacacatgcatagaggaaaaaaccgttcaagaaagcctgtggaa |
18199801 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 42091957 - 42092016
Alignment:
| Q |
19 |
aaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
78 |
Q |
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| T |
42091957 |
aaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaact |
42092016 |
T |
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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 399114 - 399189
Alignment:
| Q |
1 |
ggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
76 |
Q |
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| T |
399114 |
ggaagcatacccagactccaagtactgtgagcgccacatgcaccgtggccgcaaccgttcaagaaagcctgtggaa |
399189 |
T |
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