View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_99 (Length: 305)
Name: NF10201A_low_99
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_99 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 32650608 - 32650774
Alignment:
| Q |
133 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
232 |
Q |
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| T |
32650608 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
32650707 |
T |
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| Q |
233 |
ttctgatccatttatcacggcgataatgcaaattaatgaaaggaaagagtaaacgaattgagatgct |
299 |
Q |
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| T |
32650708 |
ttctgatccattcatcacggccataatgaaaataaatgaaaggaaagagtaaacgaattgagatgct |
32650774 |
T |
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Target: scaffold0096 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 29304 - 29195
Alignment:
| Q |
11 |
catagacatacaaattcaaaagacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaag |
110 |
Q |
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| T |
29304 |
catagacatacaaattcaaaagacatcataccaaaaaacctgagttgacatcagattttggcaacgacttctcaaatgagtggtaaaacttccttggaag |
29205 |
T |
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| Q |
111 |
aaagtaaaca |
120 |
Q |
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| T |
29204 |
aaagtaaaca |
29195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 12537298 - 12537407
Alignment:
| Q |
31 |
agacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcagggt |
127 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12537298 |
agacatcataccaaaaaacctgagttgacatcagattttggcaactacttctcaaatgtgtggtaaaacttccttggaagaaagtaaacaacatcagggg |
12537397 |
T |
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| Q |
128 |
cgttaggaat |
137 |
Q |
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| T |
12537398 |
cgttaggaat |
12537407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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