View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_high_14 (Length: 250)
Name: NF10201_high_14
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 20864849 - 20864620
Alignment:
| Q |
12 |
atgaatgatgatatctataagaggagcataaggatgagtaggtgataatccgtccttgataaaactcagttttttgagaatttgactcgcaaatgatgta |
111 |
Q |
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| T |
20864849 |
atgaatgatgatatctataagaggagcataaggatgaataggtgataatccgtccttgataaaactcagttttttgagaatttgactcgcaaatgatgta |
20864750 |
T |
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| Q |
112 |
tctggatccatgatcctaaataagttccaacctatacaaaatagtacaaagttcatcattaatattagtaccatgaccaaaactttccacaaaaccaatg |
211 |
Q |
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| T |
20864749 |
tctggatccatgatcctaaataagttccaacctatacgaaatagtacaaagttcattattaatattagtaccatgaccaaaactttccacaaaaccaatg |
20864650 |
T |
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| Q |
212 |
attcaaccaccaactgaattcgtgataaga |
241 |
Q |
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| T |
20864649 |
attcatccaccaactgaattcgtgataaga |
20864620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 43960917 - 43960765
Alignment:
| Q |
79 |
agttttttgagaatttgactcgcaaatgatgtatctggatccatgatcctaaataagttccaacctatacaaaatagtacaaagttcatcattaatatta |
178 |
Q |
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| T |
43960917 |
agttgtttgagaaactgactcgcaaatgatgtatataaatccttgttatcaaataagttgcaatccatatgaaatagcacgaatttcaggattaatatta |
43960818 |
T |
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| Q |
179 |
gtaccatgaccaaaactttccacaaaaccaatgattcaaccaccaactgaatt |
231 |
Q |
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| T |
43960817 |
gtggtataaccacaactttccacaaaaccaatgattcaaccaccaactgaatt |
43960765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 12303421 - 12303588
Alignment:
| Q |
31 |
agaggagcataaggatgagtaggtgataatccgtccttgataaaactca--gttttttgagaatttgactcgcaaatgatgtatctggatccatgatcct |
128 |
Q |
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|||| ||||||||| ||| |||||| | | |||||||||||||| ||| | | ||||||| | | ||| |||||||||| ||| ||||||| ||| |
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| T |
12303421 |
agagaagcataagggtgattaggtgcgacttcgtccttgataaaagtcaaagatgtttgagagtctaactaacaaatgatgtttctaaatccatggtccc |
12303520 |
T |
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| Q |
129 |
aaataagttccaacctatacaaaatagtacaaagttcatcattaatattagtaccatgaccaaaactt |
196 |
Q |
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| T |
12303521 |
aagtaagttgcaatccatagaaaatagcacgaagatcagcattaatattagtagtatgaccaaaactt |
12303588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 24048344 - 24048290
Alignment:
| Q |
168 |
cattaatattagtaccatgaccaaaactttccacaaaaccaatgattcaaccacc |
222 |
Q |
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| T |
24048344 |
cattaatattagtagtatgaccacaacttccaacaaaaccaatgatccaaccacc |
24048290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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