View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_high_3 (Length: 473)
Name: NF10201_high_3
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 2 - 433
Target Start/End: Original strand, 42662636 - 42663067
Alignment:
| Q |
2 |
atagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaacctcttcacatgttt |
101 |
Q |
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| T |
42662636 |
atagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaacatcttcacatgttt |
42662735 |
T |
|
| Q |
102 |
tgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataatcctcactcatttg |
201 |
Q |
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| T |
42662736 |
tgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataatcttcactcatttg |
42662835 |
T |
|
| Q |
202 |
tagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataaggagaaaggctttggct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662836 |
tagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataaggagaaaggctttggct |
42662935 |
T |
|
| Q |
302 |
cctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttcttgatatcagtggaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662936 |
cctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttcttgatatcagtggaa |
42663035 |
T |
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| Q |
402 |
actggtaataatacaagaaattaagggtttaa |
433 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42663036 |
actggtaataatacaagaaattaagggtttaa |
42663067 |
T |
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