View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_1 (Length: 511)
Name: NF10201_low_1
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 43239330 - 43239075
Alignment:
| Q |
1 |
caagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcaggttagagaaactg |
100 |
Q |
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| T |
43239330 |
caagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcaggttagagaaactg |
43239231 |
T |
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| Q |
101 |
aatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcattaatgatgttaacaatta |
200 |
Q |
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| T |
43239230 |
aatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccattaatgatgttaacaatta |
43239131 |
T |
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| Q |
201 |
ctaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatg |
256 |
Q |
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| T |
43239130 |
ctaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatg |
43239075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 287 - 495
Target Start/End: Complemental strand, 43239044 - 43238834
Alignment:
| Q |
287 |
cataatttaactgagaata-gagtaatatacctttgtcaatagtatgagcagtggaaagatcataagaatcatttgagatattcttgtcttcttgaccat |
385 |
Q |
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| T |
43239044 |
cataatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattcttgtcttcttgaccat |
43238945 |
T |
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| Q |
386 |
gttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaacgcaaga-ttt |
484 |
Q |
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| T |
43238944 |
gttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaacgcaagagttt |
43238845 |
T |
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| Q |
485 |
ggtacacatat |
495 |
Q |
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| T |
43238844 |
ggtacacatat |
43238834 |
T |
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