View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201_low_10 (Length: 370)
Name: NF10201_low_10
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 53676450 - 53676105
Alignment:
| Q |
7 |
gagaagaaaaagaaagtgggatcccaactatccaaagccaaataggagtggctataactttttctttgctgaaaagcattacaagctcaaagaactctac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676450 |
gagaagaaaaagaaagtgggatcccaactatccaaagccaaataggagtggctataactttttctttgctgaaaagcattacaagctcaaagaactctac |
53676351 |
T |
|
| Q |
107 |
ccaaacagagaaagggagtttaccaaaatgattggtcagtcctggaatagtctcagccctgaagaaagaatggtaattaaaagggtcatttcatttgtgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676350 |
ccaaacagagaaagggagtttaccaaaatgattggtcagtcctggaatagtctcagccctgaagaaagaatggtaattaaaagggtcatttcatttgtgt |
53676251 |
T |
|
| Q |
207 |
gtattgctttatcctaattggtctttacattgttgtttatctagaatctggttatcaaagttaatagttttgatttgagttagttcaaatgtagttatat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676250 |
gtattgctttatcctaattggtctttacattgttgtttatctagaatctggttatcaaagttaatagttttgatttgagttagttcaaatgtagttatat |
53676151 |
T |
|
| Q |
307 |
gtgtgttcgcctaatattgcagatttaccaaaacattggcttaagg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53676150 |
gtgtgttcgcctaatattgcagatttaccaaaacattggcttaagg |
53676105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University