View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201_low_11 (Length: 365)
Name: NF10201_low_11
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 8443729 - 8444070
Alignment:
| Q |
1 |
acatcatatgataaatttaaagcattaagaattttattgctcacgtgaaaaattaaatattatcaaatggcacgatgttaaatcttcgtagtgaagttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8443729 |
acatcatatgataaatttaaagcataaagaattttattgctcacgtgaaaaattaaatattatcaaatggcacgatgttaaatcttcgtagtgaagttgt |
8443828 |
T |
|
| Q |
101 |
gaagacgcactagataaataattctcataacctccataaaaaagcttctttataaggtatctcnnnnnnnnnctttcttggtacaatctttatggagaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
8443829 |
gaagacgcactagataaataattctcataacctccataaaaaagcttctttataaggtatc-ccttttttttctttcttggtacaatctttatggagaat |
8443927 |
T |
|
| Q |
201 |
tttatgtaatcattatactcgagttctagctgaactaaaaattttaaaataaaattgattattttttggtaatgggatannnnnnnaaggataaggggtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8443928 |
tttatgtaatcattatactcgagttctagctgaactaaaaaatttaaaataaaattgattattttttggtaatggaatatttttttaaggataaggggtc |
8444027 |
T |
|
| Q |
301 |
attgcttttctttaacaattaacaatgtacaaggaaggaagggataacat |
350 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8444028 |
attgcttttct-------ttaacaatgtacaaggaaggaagggataacat |
8444070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University