View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_12 (Length: 350)
Name: NF10201_low_12
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 9635632 - 9635376
Alignment:
| Q |
16 |
atatggagctagcttgttattttgattctcttgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacat |
115 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9635632 |
atatgaagctagcttgttattttgattctctcgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacat |
9635533 |
T |
|
| Q |
116 |
aaaacggtaatattacggtttctcatactctcagagaggggaagcagtacgcagattttatggcaaaatttagagcttcatctgatgatagttttgttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
9635532 |
aaaacggtaatattacggtttctcatactctcagagaggggaagcagtgcgcagattttatgacaaaacttagagcttcatctgatgatagttttgttct |
9635433 |
T |
|
| Q |
216 |
tcatgacttagctccagctagtctcttagaccttcttagaagtaatgccacaaacac |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9635432 |
tcatgactcagctccagctagtctcttagaccttcttagaagtaatgccacaaacac |
9635376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 13601614 - 13601870
Alignment:
| Q |
16 |
atatggagctagcttgttattttgattctcttgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacat |
115 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13601614 |
atatgaagctagcttgttattttgattctctcgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacat |
13601713 |
T |
|
| Q |
116 |
aaaacggtaatattacggtttctcatactctcagagaggggaagcagtacgcagattttatggcaaaatttagagcttcatctgatgatagttttgttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
13601714 |
aaaacggtaatattacggtttctcatactctcagagaggggaagcagtgcgcagattttatgacaaaacttagagcttcatctgatgatagttttgttct |
13601813 |
T |
|
| Q |
216 |
tcatgacttagctccagctagtctcttagaccttcttagaagtaatgccacaaacac |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13601814 |
tcatgactcagctccagctagtctcttagaccttcttagaagtaatgccacaaacac |
13601870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 36186107 - 36186326
Alignment:
| Q |
16 |
atatggagctagcttgttattttgattctcttgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacat |
115 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| || ||||||| ||||||||| |||||||||||||||||||||| ||| |||||||| ||||| |
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| T |
36186107 |
atatggagctaggttgttattctgattctcttgcttacgtcaatcttcttaatggcat-attgagagatatcatgtttatgcggtccttcttcagaacat |
36186205 |
T |
|
| Q |
116 |
aaa-------------acggtaatattacggtttctcatactctcagagaggggaagcagtacgcagattttatggcaaaatttagagcttcatctgatg |
202 |
Q |
| |
|
||| | |||||||||| |||||||| ||||||| | | ||||| | || ||||||||| ||||| ||| |||||| ||||| |||| |
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| T |
36186206 |
aaacaattgcttcttcaaagtaatattacagtttctcacactctcaaaaaagggaaccggttcgcagatttcatggcgaaacttagagtttcatttgata |
36186305 |
T |
|
| Q |
203 |
atagttttgttcttcatgact |
223 |
Q |
| |
|
|| || ||||||||||||||| |
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| T |
36186306 |
atggtcttgttcttcatgact |
36186326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 19109615 - 19109431
Alignment:
| Q |
16 |
atatggagctagcttgttattttgattctcttgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttc------ttcttca |
109 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||| |||||||| |||||||||||| |||||||||| |||||||||| ||| | ||||||| |
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| T |
19109615 |
atatagagctaacttgttattcgaattctcttatttgcatcaatcttcttaatggccccgttgagagataccatgtttatgcggtacaattgcttcttca |
19109516 |
T |
|
| Q |
110 |
aaacataaaacggtaatattacggtttctcatactctcagagaggggaagcagtacgcagattttatggcaaaatttagagcttcatctgatgat |
204 |
Q |
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|| ||||||||| ||||||||| ||||||||||||||||| || | || |||||||||||| || || ||||||||||||||||| |
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| T |
19109515 |
aa----------gtaatattatggtttctcacactctcagagaggggaaccaatgcgtagattttatggcgaagctttgagcttcatctgatgat |
19109431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 36185720 - 36185622
Alignment:
| Q |
20 |
ggagctagcttgttattttgattctcttgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacataaaa |
119 |
Q |
| |
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|||| |||||||||||| |||||||||||||| || |||| |||||||||||| |||||| || |||||||||| |||||||||||||||||||||| |
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| T |
36185720 |
ggagttagcttgttattatgattctcttgtttgcatatatcttcttaatggccccgttgaga--taccatgtttatgcggttcttcttcaaaacataaaa |
36185623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 18889103 - 18889003
Alignment:
| Q |
19 |
tggagctagcttgttattttgattctcttgtttctatcaatctacttaatggccccattgagagatatcatgtttatgtggttcttcttcaaaacataaa |
118 |
Q |
| |
|
|||| ||||||||||| | ||||| |||||||| || ||| | |||||||| |||||||||| || ||||| ||||||| ||| ||||| ||||||| |
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| T |
18889103 |
tggatctagcttgttactctgattatcttgtttgcattaatttgattaatggctccattgagaggtaccatgtctatgtggcccttattcaatacataaa |
18889004 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
18889003 |
a |
18889003 |
T |
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