View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_13 (Length: 347)
Name: NF10201_low_13
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 4441286 - 4440969
Alignment:
| Q |
8 |
ttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagattaattgctccttaaa |
107 |
Q |
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| T |
4441286 |
ttggttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagattaattgctccttaaa |
4441187 |
T |
|
| Q |
108 |
aatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccacatatctacaactac |
207 |
Q |
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| T |
4441186 |
aatattcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccacatatctacaactac |
4441087 |
T |
|
| Q |
208 |
agtttttctctgattcgatggtgttgactatacaaagaaatcacggagtgatttttagcacgctctgatttcatctaaccaagattctatgattgatttt |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4441086 |
agtttttctctgcttcgatggtgttgactatacaaagaaatcacggagtgatttttagcaagctctgatttcatctaaccaagattctatgattgatttt |
4440987 |
T |
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| Q |
308 |
caggtagccctatgtcat |
325 |
Q |
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|||||||||||||||||| |
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| T |
4440986 |
caggtagccctatgtcat |
4440969 |
T |
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