View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201_low_18 (Length: 295)

Name: NF10201_low_18
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201_low_18
NF10201_low_18
[»] chr7 (1 HSPs)
chr7 (18-279)||(28734639-28734900)
[»] chr1 (1 HSPs)
chr1 (18-107)||(8634481-8634570)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 28734639 - 28734900
Alignment:
Q  18 aatggccccacaagggtgagcccctatagaagattcatcacaattgaacttaatagttccaccgctaggaggtttccaagcaatttcagtgaagggactg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28734639 aatggccccacaagggtgagcccctatagaagattcatcacaattgaacttaatagttccaccgctagtaggtttccaagcaatttcagtgaagggactg 28734738  T
Q  118 acccttttagatttgagagggatgtgaaacagttgagagattttgtagtcctgcatagctgaagcaccattgaccaaaattaagctatgaccgagcttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28734739 acccttttagatttgagagggatgtgaaacagttgagagattttgtagtcctgcatagctgaagcaccattgaccaaaattaagctatgactgagcttga 28734838  T
Q  218 cctcagcaatcagtgttgaataaggtggtcaaagcttgatgtttgctttggaaatatctctg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734839 cctcagcaatcagtgttgaataaggtggtcaaagcttgatgtttgctttggaaatatctctg 28734900  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 8634481 - 8634570
Alignment:
Q  18 aatggccccacaagggtgagcccctatagaagattcatcacaattgaacttaatagttccaccgctaggaggtttccaagcaatttcagt 107  Q
    |||||| ||||||||||| ||||| | ||||||| |||||||||||||||| | ||| |||||  |||||||  |||||| || ||||||    
T  8634481 aatggcaccacaagggtgtgccccaacagaagatccatcacaattgaacttgacagtaccacctgtaggaggaatccaagtaacttcagt 8634570  T

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