View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_2 (Length: 502)
Name: NF10201_low_2
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_2 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 23149231 - 23149717
Alignment:
| Q |
1 |
accattcaatgctacaagaactatgtagaatttaaatgaataaaagtaataaaaacttgttcactattctagactgacaaataatttgagaaagaaatat |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149231 |
accattcaatgctacaagaactacgtagaatttaaatgaataaaagtaataaaaacttgttcactattctagactgacaaataatttgagaaagaaatat |
23149330 |
T |
|
| Q |
101 |
atttccttgaggaaacttaatatgacacattggaagtatttcacagtttaaagatctcatatgtgagataaattaattcaagggcatcttctaaataacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149331 |
atttccttgaggaaacttaatatgacacattggaagtatttcacagtttaaagatctcatatgtgagataaattaattcaagggcatcttctaaataacc |
23149430 |
T |
|
| Q |
201 |
atttaaattctactgtattaatcaagtttttcttaaatttatttagaagaggttaggttattgttcttaccaagattatggccttgatattgtctttagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23149431 |
atttaaattctactgtattaatcaagtttttcttaaagttatttagaagaggttaggttattgttcttaccaagattatggccttgatattgtctttggt |
23149530 |
T |
|
| Q |
301 |
caagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149531 |
caagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcc |
23149630 |
T |
|
| Q |
401 |
tctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatat |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149631 |
tctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaaggttacgccttaaaccagtgaaatat |
23149717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 264 - 486
Target Start/End: Original strand, 23140884 - 23141106
Alignment:
| Q |
264 |
ttcttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatc |
363 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| || |||||||| |||||| | || ||||| |||||||||||||||||||| | ||||| ||| |
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|
| T |
23140884 |
ttcttaccaggattatggccttgatattgtctttagttaaaaaaaattctttgttgtttccgtcttcgtattttatgagaacatctactatatcttcatc |
23140983 |
T |
|
| Q |
364 |
tgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaagg |
463 |
Q |
| |
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|| |||| |||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
23140984 |
tgattcaccttggtcatagttggcttttgacttggcctccttgtgctcactgatgatgttttccattatctgatcaacctgtcgatgcaccctctcaagg |
23141083 |
T |
|
| Q |
464 |
ttacgccttaaaccagtgaaata |
486 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
23141084 |
gtaggccttaaaccagtgaaata |
23141106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 268 - 438
Target Start/End: Original strand, 23024891 - 23025061
Alignment:
| Q |
268 |
taccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatctgtt |
367 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||| | |
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| T |
23024891 |
taccatgattatggccttgatattgtctatagttaagaaaaattccttgttattgccatcttgatattttaagagaacatctaccagatcttcgtctgat |
23024990 |
T |
|
| Q |
368 |
tcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgttttccattatctgatc |
438 |
Q |
| |
|
||| |||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
23024991 |
tcaacttggtcaaattctccctttgacttggcctctttgtgctcattgatgatgttttccattatctgatc |
23025061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 480
Target Start/End: Original strand, 23039660 - 23039877
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatctg |
365 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || ||| ||| |||| |||||| || || |||||||||| |||||| ||||| ||||||| ||| |
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| T |
23039660 |
cttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttcta |
23039759 |
T |
|
| Q |
366 |
tttcagcttggtcataactgccttttg---acttggcctctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaag |
462 |
Q |
| |
|
|| | |||| |||| || |||||| |||| ||||||| ||||| ||||||||||||| | |||||||||| ||||| |||| ||||||||| |
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| T |
23039760 |
ctttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaag |
23039859 |
T |
|
| Q |
463 |
gttacgccttaaaccagt |
480 |
Q |
| |
|
||| |||| | |||||| |
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|
| T |
23039860 |
cttaggcctcataccagt |
23039877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 480
Target Start/End: Original strand, 23146535 - 23146752
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatctg |
365 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || ||| ||| |||| |||||| || || |||||||||| |||||| |||| |||||||| ||| |
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| T |
23146535 |
cttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctatcagatcttcttcta |
23146634 |
T |
|
| Q |
366 |
tttcagcttggtcataactgccttttg---acttggcctctttgtgctcggtgatgatgttttccattatctgatcaatttgtagatgctccctctcaag |
462 |
Q |
| |
|
|| | |||| |||| || |||||| |||| ||||||| ||||| ||||||||||||| | |||||||||| ||||| |||| ||||||||| |
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|
| T |
23146635 |
ctttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttcaaatatctgatcagtttgtcgatgaaacctctcaag |
23146734 |
T |
|
| Q |
463 |
gttacgccttaaaccagt |
480 |
Q |
| |
|
||| |||| | |||||| |
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|
| T |
23146735 |
cttaggcctcataccagt |
23146752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 23033475 - 23033568
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
359 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||| || || | || || ||||| |||||||||| ||||| ||||||||||||| |
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|
| T |
23033475 |
cttaccaagattatagccttgatattgtcttttgttaagaagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatctt |
23033568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 23017869 - 23017962
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || | || || | || || ||||| |||||||||| ||||| ||||||||||||| |
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|
| T |
23017869 |
cttaccaagattatggccttgatattgtcttttgttaatgagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatctt |
23017962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 23036783 - 23036876
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
359 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||| ||| || | ||| |||||||| || || |||| |||||| ||||| ||||||| |
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|
| T |
23036783 |
cttaccattattatggccttgatattgttttttgtcaaggaaaggtcttggtttctgccatcctcgtaatttaagagaacgtctacgagatctt |
23036876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 5900 - 5807
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
359 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||| || ||| |||| ||||||||||| |||||||||||||||| |||||| |||| ||||||| |
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|
| T |
5900 |
cttaccatgataatggctttgatattgtcttttgttaaggaaaactccttgttgctaccatcttcatattttaagagaacgtctaatagatctt |
5807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 21780550 - 21780643
Alignment:
| Q |
266 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
359 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||| |||| ||| |||||| ||||| |||||||||| |||||| ||||| ||||||| |
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|
| T |
21780550 |
cttaccattattatggccttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatctt |
21780643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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