View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_21 (Length: 259)
Name: NF10201_low_21
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 7133148 - 7132904
Alignment:
| Q |
1 |
tttaagatgtgttttctaatgtttattttatccttgaaaatagaaataagaaacaccaaaagtagaacatgtcattagtttcctttccacttggttgttt |
100 |
Q |
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| T |
7133148 |
tttaagatgtgttttctaatgtttattttatccttgaaaatagaaataagaaacaccaaaagtagaacatgtcattagtttcctttccacttggttgttt |
7133049 |
T |
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| Q |
101 |
ttgtgagggaggtacaggagttgtccaatccgggtatgctaaatactgtgatacttctatggtgtttggatatgtttcttcctgttgtattttgttatta |
200 |
Q |
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| T |
7133048 |
ttgtgagggaggtacaggagttgtccaatccgggtatgcaaaatactatgatacttctatggtgtttggatatgtttcttcctgttgtattttgttatta |
7132949 |
T |
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| Q |
201 |
tttgaatgtcttgagaatctgaggtttttaattggttgagtgtct |
245 |
Q |
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| T |
7132948 |
tttgaatgtcttgagaatctgaggtttttaattggttgagtgtct |
7132904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20864060 - 20864309
Alignment:
| Q |
1 |
tttaagatgtgttttctaatgtttattttatccttgaaaatagaaataagaaacaccaaaagtagaacatgtcattagtttcctttcc--acttggttgt |
98 |
Q |
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| T |
20864060 |
tttaagatgtcttttctaatgtttattttatagt-gaaaatagaaataagaaacaccaaaagtaaaacatgtcattagtttcctttctctacttggtggt |
20864158 |
T |
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| Q |
99 |
ttttgtgagggaggtacaggagttgtccaatccgggtatgctaaatactgtgatacttctatggtgttt-ggatatgtttcttcctgttgtatt---ttg |
194 |
Q |
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| T |
20864159 |
ttttgtgggggaggtacaggagttgtccaatctgggtatgcaaaatactatgatacttctatggtgtttgggatatgattcttcctgttggattttgttg |
20864258 |
T |
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| Q |
195 |
ttattatttgaatgtcttgagaatctgaggtttttaattggttgagtgtct |
245 |
Q |
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| T |
20864259 |
ttattttttgaatgtcttgagaatttgaggtttttaattagttgagtgtct |
20864309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 53045554 - 53045499
Alignment:
| Q |
118 |
gagttgtccaatccgggtatgctaaatactgtgatacttctatggtgtttggatat |
173 |
Q |
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| T |
53045554 |
gagttgttcaatctgggtgtgcaaaatgctgtgatatttctatggtgtttggatat |
53045499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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