View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201_low_25 (Length: 249)

Name: NF10201_low_25
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201_low_25
NF10201_low_25
[»] chr2 (9 HSPs)
chr2 (96-176)||(18056227-18056307)
chr2 (17-86)||(18056334-18056403)
chr2 (183-231)||(18056142-18056190)
chr2 (17-80)||(14955687-14955750)
chr2 (17-84)||(1421834-1421901)
chr2 (110-144)||(39569872-39569906)
chr2 (8-80)||(4904024-4904096)
chr2 (114-162)||(7677663-7677710)
chr2 (122-162)||(14955811-14955850)
[»] chr1 (4 HSPs)
chr1 (4-84)||(28053591-28053671)
chr1 (17-80)||(15431544-15431607)
chr1 (114-144)||(47025680-47025710)
chr1 (8-77)||(39888324-39888393)
[»] chr4 (6 HSPs)
chr4 (17-82)||(37465650-37465715)
chr4 (6-82)||(36184688-36184764)
chr4 (17-80)||(9714078-9714141)
chr4 (17-80)||(22806704-22806767)
chr4 (17-80)||(43853611-43853674)
chr4 (8-86)||(33921213-33921291)
[»] chr8 (5 HSPs)
chr8 (6-54)||(428993-429041)
chr8 (17-80)||(5046903-5046966)
chr8 (1-84)||(8441331-8441414)
chr8 (17-80)||(33347397-33347460)
chr8 (8-86)||(27110335-27110413)
[»] chr7 (4 HSPs)
chr7 (17-80)||(13796807-13796870)
chr7 (17-80)||(40993307-40993370)
chr7 (17-86)||(46822615-46822683)
chr7 (6-54)||(46244156-46244204)
[»] chr6 (3 HSPs)
chr6 (17-84)||(30608389-30608456)
chr6 (105-162)||(29319666-29319722)
chr6 (17-80)||(29319755-29319819)
[»] chr5 (4 HSPs)
chr5 (6-84)||(8514526-8514604)
chr5 (3-69)||(11192512-11192578)
chr5 (1-80)||(3271260-3271340)
chr5 (8-80)||(41630640-41630712)
[»] chr3 (2 HSPs)
chr3 (17-54)||(12050552-12050589)
chr3 (13-86)||(38142668-38142741)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 18056307 - 18056227
Alignment:
Q  96 gaatatgtgttgtatattatatactttatcaatttaaataaatgaatatcaattttgtttttgtcaaccaagatcagccac 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18056307 gaatatgtgttgtatattatatactttatcaatttaaataaatgaatatcaattttatttttgtcaaccaagatcagccac 18056227  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 18056403 - 18056334
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 86  Q
    ||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  18056403 ttatcatattatttgtaagtattttgtcattgtatgttgttaacttagatgttatgagtttgtttgcata 18056334  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 18056190 - 18056142
Alignment:
Q  183 atttttggattcaagaatttatttgtaaagttgaaaaagtgaagatata 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18056190 atttttggattcaagaatttatttgtaaagttgaaaaagtgaagatata 18056142  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 14955687 - 14955750
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||||||||||||||||  ||||||||| ||||||||| || |||||| |||| ||||||||||    
T  14955687 ttatcatattatttgtagacattttatcattgtatgttattaacttaggtgttgtgagtttgtt 14955750  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 1421834 - 1421901
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 84  Q
    ||||||||||||||||| ||||||| || ||||||| | || |||| | |||| ||||||||||||||    
T  1421834 ttatcatattatttgtaggcattttgtcgttgtatgctattaacttgggtgttgtgagtttgtttgca 1421901  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 39569906 - 39569872
Alignment:
Q  110 tattatatactttatcaatttaaataaatgaatat 144  Q
    ||||||||||| |||||||||||||||||||||||    
T  39569906 tattatatactctatcaatttaaataaatgaatat 39569872  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 4904096 - 4904024
Alignment:
Q  8 actttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||| ||| |||||||||||||||||  |||||| || ||||||| | || |||| |||||| ||||||||||    
T  4904096 acttagattttatcatattatttgtagacattttgtcgttgtatgctattaacttggatgttgtgagtttgtt 4904024  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 7677710 - 7677663
Alignment:
Q  114 atatactttatcaatttaaataaatgaatatcaattttgtttttgtcaa 162  Q
    ||||||| |||||||||||| |||||||||||  |||||||||||||||    
T  7677710 atatactctatcaatttaaaaaaatgaatatc-gttttgtttttgtcaa 7677663  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 14955811 - 14955850
Alignment:
Q  122 tatcaatttaaataaatgaatatcaattttgtttttgtcaa 162  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  14955811 tatcaatttaaatgaatgaatatc-attttgtttttgtcaa 14955850  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 28053671 - 28053591
Alignment:
Q  4 gatcactttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 84  Q
    |||||||||||| ||||||||||||||||| |||||||||  ||||||| | || |||| |||||||||||||| ||||||    
T  28053671 gatcactttgattttatcatattatttgtaggcattttattgttgtatgatctttacttggatgttatgagtttatttgca 28053591  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 15431607 - 15431544
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||||||||||||||||  ||||||||| ||||||| | || |||| |||||| ||||||||||    
T  15431607 ttatcatattatttgtagacattttatcgttgtatgctattcacttggatgttgtgagtttgtt 15431544  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 144
Target Start/End: Original strand, 47025680 - 47025710
Alignment:
Q  114 atatactttatcaatttaaataaatgaatat 144  Q
    |||||||||||||||||||||||||||||||    
T  47025680 atatactttatcaatttaaataaatgaatat 47025710  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 39888324 - 39888393
Alignment:
Q  8 actttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagttt 77  Q
    |||| ||| |||||||||| ||| || |||||||||| ||||||| | || ||||||||||| |||||||    
T  39888324 acttagattttatcatattctttatatgcattttatcgttgtatgctattaacttagatgttgtgagttt 39888393  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 37465650 - 37465715
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttg 82  Q
    ||||||||||||||||||||||||| || ||||||| | || |||| | |||| ||||||||||||    
T  37465650 ttatcatattatttgtaagcattttgtcgttgtatgctattaacttgggtgttgtgagtttgtttg 37465715  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 36184688 - 36184764
Alignment:
Q  6 tcactttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttg 82  Q
    |||||||||| |||||||| ||||| || ||||||| || ||||||| | || |||| |||||| ||||||||||||    
T  36184688 tcactttgattttatcatactatttctaggcattttgtcgttgtatgctattaacttggatgttgtgagtttgtttg 36184764  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 9714078 - 9714141
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    ||||||||||||||||| ||||||| || |||||||||||| ||||   |||| ||||||||||    
T  9714078 ttatcatattatttgtaggcattttgtcattgtatgttgttaacttgagtgttgtgagtttgtt 9714141  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 22806704 - 22806767
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    ||||||||||||||||||||||||| |  ||||||||| || |||| |||| ||||| ||||||    
T  22806704 ttatcatattatttgtaagcattttgttgttgtatgttattaacttggatgctatgaatttgtt 22806767  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 43853611 - 43853674
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||||||||||||||| |||||||| |  ||||||||| || |||| |||||| ||||||||||    
T  43853611 ttatcatattatttgtcagcattttgttgttgtatgttattaacttggatgttgtgagtttgtt 43853674  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 33921213 - 33921291
Alignment:
Q  8 actttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 86  Q
    |||| ||| ||||||||||||||||| ||||| |||  ||||||| | || |||| |||||| |||||||||| |||||    
T  33921213 acttagattttatcatattatttgtaggcattgtatagttgtatgctattaacttggatgttgtgagtttgttcgcata 33921291  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 429041 - 428993
Alignment:
Q  6 tcactttgatcttatcatattatttgtaagcattttatccttgtatgtt 54  Q
    |||||||||| |||||||||||||| |||||||||| || |||||||||    
T  429041 tcactttgattttatcatattatttataagcattttttcgttgtatgtt 428993  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 5046903 - 5046966
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    ||||||||||||||||| |||||||||| ||||||||| || |||| | || | ||||||||||    
T  5046903 ttatcatattatttgtaggcattttatcgttgtatgttattaacttgggtgatgtgagtttgtt 5046966  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8441331 - 8441414
Alignment:
Q  1 tccgatcactttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 84  Q
    |||||| ||||| || ||||||||||||||| | | |||||||| ||||||| | || | ||||||| ||||||||| ||||||    
T  8441331 tccgataactttaattttatcatattatttgcaggtattttatcgttgtatgctattaatttagatgatatgagtttatttgca 8441414  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 33347460 - 33347397
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    ||||||||||||||||| ||||||| || ||||||| | || | |||| |||||||||||||||    
T  33347460 ttatcatattatttgtaggcattttgtcattgtatgctattaaattaggtgttatgagtttgtt 33347397  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 27110413 - 27110335
Alignment:
Q  8 actttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 86  Q
    |||| ||| |||||||||||||||||  ||||||||| ||||||| | || |||| | |||| |||||||||| |||||    
T  27110413 acttagattttatcatattatttgtagacattttatcgttgtatgctattaacttgggtgttgtgagtttgttcgcata 27110335  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 13796870 - 13796807
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    ||||||||||||||||| ||||||| || ||||||| | || |||| |||||| ||||||||||    
T  13796870 ttatcatattatttgtaggcattttgtcgttgtatgctattaacttggatgttgtgagtttgtt 13796807  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 40993307 - 40993370
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    ||||||||||||||||| ||||||| || ||||||||| || |||| | |||| ||||||||||    
T  40993307 ttatcatattatttgtaggcattttgtcgttgtatgttattaacttgggtgttgtgagtttgtt 40993370  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 46822683 - 46822615
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 86  Q
    |||||||||||||||| |||||||| || ||||||| | || |||| |||||| |||||||||| |||||    
T  46822683 ttatcatattatttgt-agcattttgtcattgtatgctattaacttggatgttgtgagtttgttcgcata 46822615  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 46244204 - 46244156
Alignment:
Q  6 tcactttgatcttatcatattatttgtaagcattttatccttgtatgtt 54  Q
    ||||||| || ||||||||||||||||| ||||||| || |||||||||    
T  46244204 tcactttaattttatcatattatttgtaggcattttgtcattgtatgtt 46244156  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 30608456 - 30608389
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 84  Q
    ||||||||||||||||| |||||||| | ||||||| | || |||| |||||| |||| |||||||||    
T  30608456 ttatcatattatttgtaggcattttaccgttgtatgctattaacttggatgttgtgagattgtttgca 30608389  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 29319722 - 29319666
Alignment:
Q  105 ttgtatattatatactttatcaatttaaataaatgaatatcaattttgtttttgtcaa 162  Q
    |||||| | ||||||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  29319722 ttgtatctgatatactttattaatttgaatgaatgaatatc-attttgtttttgtcaa 29319666  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 29319819 - 29319755
Alignment:
Q  17 ttatcatattattt-gtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||||||||||||| |||||||||||| | ||||||| | || |||| | |||||||||||||||    
T  29319819 ttatcatattattttgtaagcattttaccgttgtatgctattaacttggttgttatgagtttgtt 29319755  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 8514604 - 8514526
Alignment:
Q  6 tcactttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 84  Q
    ||||||| || ||||||||||||||||||  ||||| || ||||||||| || |||| ||| |||| | ||||||||||    
T  8514604 tcacttttattttatcatattatttgtaaatattttgtcgttgtatgttattaactttgattttattaatttgtttgca 8514526  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 11192512 - 11192578
Alignment:
Q  3 cgatcactttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgtt 69  Q
    |||||||||| |  ||||| ||||||||||||||||||| || ||||||||| || |||| ||||||    
T  11192512 cgatcactttaaatttatcgtattatttgtaagcattttgtcgttgtatgttattaactttgatgtt 11192578  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3271340 - 3271260
Alignment:
Q  1 tccgatcactttgatcttatcatat-tatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||||||||||| || ||||||||| | |||||||||||| | || || |||| | || |||| |||||||||||||||||    
T  3271340 tccgatcactttaattttatcatatatttttgtaagcattatgtcgttatatgctattaacttggatgttatgagtttgtt 3271260  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 41630640 - 41630712
Alignment:
Q  8 actttgatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 80  Q
    |||| ||| |||||||||||||||||  |||||| || ||||||| | || |||||| |||| ||||||||||    
T  41630640 acttagattttatcatattatttgtagacattttgtcgttgtatgctattaacttaggtgttgtgagtttgtt 41630712  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 12050589 - 12050552
Alignment:
Q  17 ttatcatattatttgtaagcattttatccttgtatgtt 54  Q
    ||||||||||||||||||||||||| || |||||||||    
T  12050589 ttatcatattatttgtaagcattttgtcgttgtatgtt 12050552  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 38142668 - 38142741
Alignment:
Q  13 gatcttatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 86  Q
    ||||||||||||||||||||| |||||||||  ||||||  | || ||||  ||| | ||||||||||||||||    
T  38142668 gatcttatcatattatttgtaggcattttattgttgtatactattaacttgaatgctgtgagtttgtttgcata 38142741  T

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