View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_29 (Length: 241)
Name: NF10201_low_29
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7133142 - 7133251
Alignment:
| Q |
1 |
tcttaaaaattcagacaaatttctaaacattgtttttaatgtttcctaaaatacattctcgccagtcagcttccattttctccctcaaaatttcaaagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7133142 |
tcttaaaaattcagacaaatttctaaacattgtttttaatgtttcctaaaatacattctcgccagtcagcttccattttctccctcacaatttcaaagaa |
7133241 |
T |
|
| Q |
101 |
cacacactca |
110 |
Q |
| |
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|||||||||| |
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| T |
7133242 |
cacacactca |
7133251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 7133384 - 7133494
Alignment:
| Q |
113 |
atttcggtccaactcattaattaccaaatcatttctaatagtttctaaatgttagtatgttaattgtcaggttagattctctttgtcaggattcgaaccc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
7133384 |
atttcggtccaactcattaattaccaaatcatttctaatagtttctaaatgttagtatgttaattgttaggttagtttctctttgtcaggattcgaaccc |
7133483 |
T |
|
| Q |
213 |
cggacctttaa |
223 |
Q |
| |
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||||||||||| |
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| T |
7133484 |
cggacctttaa |
7133494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 20863839 - 20863773
Alignment:
| Q |
113 |
atttcggtccaactcattaattaccaaatcatttctaatagtttctaaatgttagtatgttaattgt |
179 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20863839 |
atttcggtccaactcattaaataccaaatcatttctaatagtttcgaaatgttagtatgttaattgt |
20863773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20864066 - 20863984
Alignment:
| Q |
1 |
tcttaaaaattcagacaaatttctaaacattgtttttaatgtttcctaaaatacattctcgccagtcagcttccattttctccc |
84 |
Q |
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|
||||||||||||| | ||||||||||||||| |||||||| |||||| |||||||||||| || |||||||||||| ||||||| |
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| T |
20864066 |
tcttaaaaattcaaaaaaatttctaaacattatttttaatatttcct-aaatacattctcacccgtcagcttccatcttctccc |
20863984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 21945720 - 21945766
Alignment:
| Q |
113 |
atttcggtccaactcattaattaccaaatcatttctaatagtttcta |
159 |
Q |
| |
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||||| |||||||||||||||| ||||||| || ||||||||||||| |
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| T |
21945720 |
atttcagtccaactcattaatttccaaatctttcctaatagtttcta |
21945766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 13296633 - 13296592
Alignment:
| Q |
113 |
atttcggtccaactcattaattaccaaatcatttctaatagt |
154 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||||| |
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|
| T |
13296633 |
atttcggtccaactcattaatttccaaatcttgtctaatagt |
13296592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 43752030 - 43752074
Alignment:
| Q |
114 |
tttcggtccaactcattaattaccaaatcatttctaatagtttct |
158 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||| |
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| T |
43752030 |
tttcggtccaactcattaatttccaaatctttcctaatagtttct |
43752074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 79713 - 79670
Alignment:
| Q |
113 |
atttcggtccaactcattaattaccaaatcatttctaatagttt |
156 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||||||||| |
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| T |
79713 |
atttcggtccagctcattaatttccaaatcattcctaatagttt |
79670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 35362732 - 35362777
Alignment:
| Q |
113 |
atttcggtccaactcattaattaccaaatcatttctaatagtttct |
158 |
Q |
| |
|
||||| |||||||||||||||| ||||||| || |||||||||||| |
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| T |
35362732 |
atttcagtccaactcattaatttccaaatctttcctaatagtttct |
35362777 |
T |
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