View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_30 (Length: 238)
Name: NF10201_low_30
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 20864316 - 20864535
Alignment:
| Q |
16 |
ataatctttgtttatggttcaagatgtatacaaccgcccaacatatcgctctatttctcatcggatgttggtttattttgaagtctagaaatggtgaagc |
115 |
Q |
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| T |
20864316 |
ataatctttgtttatggttcaagatgtatacaaccgcccaacatatcgctctatttctcatcggatgttggtttattttgaagtctagaaatggtgaagc |
20864415 |
T |
|
| Q |
116 |
ttattttcaatatcagtcaccttctctggtatactcttagccaaatctactctctctttaattccaccaagatggtttttgatggtccatttcttatccc |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20864416 |
ttattttcaatatcagtcactttctctggtatactcttagccaaatctactctctctttaattccaccaagatggtttttgatggtccttttcttatccc |
20864515 |
T |
|
| Q |
216 |
cgctcctaggttggtttatt |
235 |
Q |
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|||||||||||||||||||| |
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| T |
20864516 |
cgctcctaggttggtttatt |
20864535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 43583558 - 43583439
Alignment:
| Q |
64 |
ctctatttctcatcggatgttggtttattttgaagtctagaaatggtgaagcttattttcaatatcagtcaccttctctggtatactcttagccaaatct |
163 |
Q |
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|||| |||||||| |||||||||||||||| || |||||||||| |||||||| | ||||| || |||||| |||| |||||||| | | ||||| | |
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| T |
43583558 |
ctctctttctcattggatgttggtttatttgaaaatctagaaatgatgaagctt-tcttcaacattagtcac--tctcaagtatactcattgtcaaatat |
43583462 |
T |
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| Q |
164 |
actctctctttaattccaccaag |
186 |
Q |
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||||| ||| ||||||||||||| |
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| T |
43583461 |
actctttctataattccaccaag |
43583439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 7407698 - 7407746
Alignment:
| Q |
69 |
tttctcatcggatgttggtttattttgaagtctagaaatggtgaagctt |
117 |
Q |
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|||||||||| |||||||||||||| ||| |||||||||| | |||||| |
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| T |
7407698 |
tttctcatcgaatgttggtttatttggaattctagaaatgataaagctt |
7407746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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