View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_31 (Length: 237)
Name: NF10201_low_31
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 27835235 - 27835435
Alignment:
| Q |
13 |
cggttgattataattaaaatatttctaatataaaatatcattcactaatttatttttggctataaataaggtcgtgtaaaaatatttttctatcgtaaaa |
112 |
Q |
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| T |
27835235 |
cggttgattataattaaaatatttctaatataaaatatcattcactaatttatttttggctataaataaggtcatgtaaaaatacttttctatcgtaaaa |
27835334 |
T |
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| Q |
113 |
cttgaaatacaaaaatcttcatcaatttaataaagattgggaaaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcacctt |
212 |
Q |
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| T |
27835335 |
cttgaaatacaaaaatcttcatcaatttaataaagattgggaaaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcacctt |
27835434 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
27835435 |
a |
27835435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 24649313 - 24649224
Alignment:
| Q |
96 |
atttttctatcgtaaaacttgaaatacaaaaatcttcatcaatttaataaagattgggaaaatataaatattgaggaaagttatggcatt |
185 |
Q |
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| T |
24649313 |
atttttctattgtaaaacttgaaacacagaaaaattaatatatttaatagtgatcaggaaaatataattattgagaaaagttatggcatt |
24649224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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