View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201_low_34 (Length: 218)
Name: NF10201_low_34
Description: NF10201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 10505463 - 10505658
Alignment:
| Q |
1 |
ggtctaaattttaagctagatannnnnnn-aggaaattgcttgttggcacgacaccaatacaagcacgaaaatgcgacattgatataatccttggatgaa |
99 |
Q |
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| T |
10505463 |
ggtctaaattttaagctagatatttattttaggaaattgcttgttggcacgacaccaatacaaacacgaaa-tgcgacattgatataatccttggatgaa |
10505561 |
T |
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| Q |
100 |
taatgtgcagcattgcttttatccannnnnnnaatgtattatatgctatccattgattccaacatcgtgtgttgtcgttggtcattgagtcgtgctaaat |
199 |
Q |
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| T |
10505562 |
taatgtgcggcattgcttttatcc----ccccaatgtattgtatgctatccattgattccaacatggtgtgttgtcgttggtcattgagtcgtgccaaat |
10505657 |
T |
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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 3450059 - 3450232
Alignment:
| Q |
30 |
aggaaattgcttgttggcacgacaccaatacaagcacgaaaatg--cgacattgatataatccttggatgaataatgtgcagcattgctttta-tccann |
126 |
Q |
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| T |
3450059 |
aggaaattgcttgttggcacgacaccaatacaaacacgaaaacgcacgacactaatataacccttggatgaataatgtgcagcattgcttttattctctc |
3450158 |
T |
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| Q |
127 |
nnnnnaatgtattatatgctatccattgattccaacatcgtgtgttgtcgttggtcattgagtcgtgctaaata |
200 |
Q |
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| T |
3450159 |
tcccccatgtagtgtatgctatccgttgattccaacgtcgtgtgttgtcatcagtcattgaatcgtgctaaata |
3450232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 34254374 - 34254465
Alignment:
| Q |
30 |
aggaaattgcttgttggcacgacaccaatacaagcacgaaaatgc--gacattgatataatccttggatgaataatgtgcagcattgctttt |
119 |
Q |
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| T |
34254374 |
aggaaaatgcttgttggcacgacaccaacacaagcctgaatacacacgacaatgatatagcccttggatgaaaaatgtgcagcattgctttt |
34254465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 40891831 - 40891752
Alignment:
| Q |
44 |
tggcacgacaccaatacaagcacgaaaatgc--gacattgatataatccttggatgaataatgtgcagcattgcttttat |
121 |
Q |
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| T |
40891831 |
tggcacgacaacaatacaagcacgaaaacgcacgacaccaatataacccttggatgaagaatgtgcaacattgcttttat |
40891752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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