View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_high_1 (Length: 596)
Name: NF10202_high_1
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 47918442 - 47919010
Alignment:
| Q |
1 |
ggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagcttttgaaattgctgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918442 |
ggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagcttttgaaattgctgc |
47918541 |
T |
|
| Q |
101 |
tgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatannnnnnnctttccattttctcacgtttatttctgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | |||||||||||||| |
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| T |
47918542 |
tgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatatt------tttttatgt----atatttatttctgtcca |
47918631 |
T |
|
| Q |
201 |
attctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918632 |
attctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
47918731 |
T |
|
| Q |
301 |
gtcaaatgcggcttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggttgcaaactctttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918732 |
gtcaaatgcggcttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggttgcaaactctttaa |
47918831 |
T |
|
| Q |
401 |
aaagaaatgctaagtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgcaggtgctgttgaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918832 |
aaagaaatgctaagtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgcaggtgctgttgaa |
47918931 |
T |
|
| Q |
501 |
acctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttgatatccgtctt |
579 |
Q |
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| T |
47918932 |
acctccaagtgacgaacctcttattggacatgttgataatgcaaagcttattgacatgaccggtgttgatatccgtctt |
47919010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 6932520 - 6932600
Alignment:
| Q |
225 |
ttatgtataaactctttt---ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
302 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
6932520 |
ttatgtataaactctttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
6932600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 38 - 360
Target Start/End: Complemental strand, 29918694 - 29918375
Alignment:
| Q |
38 |
agcactcaaagggtgaccattccggcataattcaggtactaatta---agcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
134 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| | |||| || |
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| T |
29918694 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttag |
29918595 |
T |
|
| Q |
135 |
agtattagtaatataaatcaagattatannnnnnnctttccattttctcacgtttatttctgtccaattctatctgaagtgaaagagtttttatgtataa |
234 |
Q |
| |
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|| |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||||||| || ||||||||||||| |
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| T |
29918594 |
agaattagtaatataaatcaagattcaaattat---tttccattttctcacacctatttatgtccaattctatgtgaagtgaa-gactttttatgtataa |
29918499 |
T |
|
| Q |
235 |
actcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgtcaaatgcggcttatacattccattgtggtcgc |
334 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| || ||||||| |||||| |
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| T |
29918498 |
actctttt--attgccgatgtattcttttgttccagacttgttatctggtttaatccattgaatctgttaaatgcggcttatgcaatccattgcggtcgc |
29918401 |
T |
|
| Q |
335 |
agttgcaaagacatgaatattaaaac |
360 |
Q |
| |
|
|||||||||||||| ||||| ||||| |
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|
| T |
29918400 |
agttgcaaagacatcaatataaaaac |
29918375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 469 - 579
Target Start/End: Complemental strand, 29918330 - 29918220
Alignment:
| Q |
469 |
ctgatgaatgatattttgcaggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttg |
568 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||| |
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| T |
29918330 |
ctgatgaatgatattttgcaggtgatgctgaaacctccaagtgacgaacctcttattggaaatgctgatgatgcaaagcttattgacctgaccgatgttg |
29918231 |
T |
|
| Q |
569 |
atatccgtctt |
579 |
Q |
| |
|
||||||||||| |
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|
| T |
29918230 |
atatccgtctt |
29918220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 508582 - 508662
Alignment:
| Q |
225 |
ttatgtataaactctttt---ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
302 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
508582 |
ttatgtataaactctttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
508662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29918790 - 29918750
Alignment:
| Q |
1 |
ggggagatgaacctgttgagcctataaaggttcgaaaagca |
41 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||| |
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| T |
29918790 |
ggggtgatgaacctgttgagcctataaaggttcaaaaagca |
29918750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 26291192 - 26291271
Alignment:
| Q |
225 |
ttatgtataaactctttt----ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
300 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
26291192 |
ttatgtataaactcttttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatct |
26291271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 18290906 - 18290981
Alignment:
| Q |
226 |
tatgtataaactctttttta-ttgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
300 |
Q |
| |
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||||||||||||| |||||| || || | ||||||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
18290906 |
tatgtataaactcctttttaattcccaatatattcttttgttccaaacttgttatattctttagtcaattgaatct |
18290981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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