View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_high_3 (Length: 498)
Name: NF10202_high_3
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 29954335 - 29953866
Alignment:
| Q |
18 |
acagaatatacacgagaagaaattttgggtcgaaactgtcggtataagttctactatatattcatgcannnnnnnnccttgtagaatttctgattatata |
117 |
Q |
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| T |
29954335 |
acagaatatacacgagaagaaattttgggtcgaaactgtcggtataagttatactatatattcatgcattttttttccttgtagaatttctgattatata |
29954236 |
T |
|
| Q |
118 |
cacttgtgacatgtaaattgaccactttacaaaaagtgtgttccctttcnnnnnnnnn--tcagcaatcataaagagtatattctaaagagtgtgttgca |
215 |
Q |
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| T |
29954235 |
cacttgtgacttgtaaattgaccactttacaaaaagtgtgttccctttcaaaaaaaaaaatcagcaatcataaagagtatattctaaagagtgtgttgca |
29954136 |
T |
|
| Q |
216 |
gtatttctcatttttaaaattaatgttaaaattctttggaggatcaaagttatgatacttgcattattgagaaacaaaagcaatggctggaatcttttga |
315 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29954135 |
gtatttctcatttttaaaattaatgttgaaattctttggaggatcaaagttatgatacttgcattattgagaaacaaaagcaatgactggaatcttttga |
29954036 |
T |
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| Q |
316 |
ggaccagtaatgatgcttgtatctttgagaacaagcatagttgttttctcatattttatctctgtctgtggctttctattttatgatggatagatagtct |
415 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29954035 |
ggaccagtgatgatgcttgtatctttgagaacaagcatagttgttttctcatattttctctctgtctgtggctttctattttatgatggatagatagtct |
29953936 |
T |
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| Q |
416 |
ttaaagttaagcgtttttggttatttatggtaacgaatggtaaatttttcatggttaagatatgatgtcc |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29953935 |
gtaaagttaagcgtttttggttatttatggtaacgaatggtaaatttttcatggttaagatataatgtcc |
29953866 |
T |
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