View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_high_4 (Length: 477)
Name: NF10202_high_4
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 43217119 - 43217558
Alignment:
| Q |
1 |
aagagagtcactttcaccatttatactatcaaaacccctctgatgcgcaagcttcattcacatatagattcctagagctgtgaagcaaaagtggtacaac |
100 |
Q |
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| T |
43217119 |
aagagagtcactttcaccatttatactatcaaaacccctctgatgcgcaagcttcattcacatatc----cctagagctgtgaagcaaaagtggtacaac |
43217214 |
T |
|
| Q |
101 |
aaccgagattttcactgaaacttctgatgaaagcatcggtacgatccctaagcaaacctccacaagaagctttgccatatagatgatgaacaacaccatc |
200 |
Q |
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| T |
43217215 |
aaccgagattttcactgaaacttctgatgaaag-atcggtacgatccctaagcaaacctccacaagaagctttgccatatagatgatgaacaacaccatc |
43217313 |
T |
|
| Q |
201 |
aatattgagttttagccactaagcagagggtggacaccaacgaatatcacttgggacatgtaactgcatggatatagtctcttgaagagagaactaaaga |
300 |
Q |
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| T |
43217314 |
aatattgagttttagccactaagcagagggtggacaccaacgaatatcacttgggacatgtaactgcatggttatagtctcttgaagagagaactaaaga |
43217413 |
T |
|
| Q |
301 |
ccttgtgttatgtagaatcaacaagctcgttaatcctttcaatagtattcttcaacaaaatatataggggtttg------gataaatacattcctcctat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43217414 |
ccttgtgttatgtagaatcaacaagctcgttaatcctctcaatagtattcttcaacaaaatatataggggtttggtcaaagataaatacattcctcctat |
43217513 |
T |
|
| Q |
395 |
gccaaagaacttccaaggtgattccaaagattagagtacggtctat |
440 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43217514 |
gccaaagaacttccaaggtgattccaaaga-tagagtacggtctat |
43217558 |
T |
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