View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_high_9 (Length: 269)
Name: NF10202_high_9
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_high_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 3855420 - 3855173
Alignment:
| Q |
22 |
accatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctc |
121 |
Q |
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| T |
3855420 |
accatgttgataaatatcttactcatttgcccaaacttaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctc |
3855321 |
T |
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| Q |
122 |
tgtatgtccacttctcgaggatttactcataaaaaatgtcagcacccatgatgataatgatactcttgatgctcttgctaaacaaacagacgagttatta |
221 |
Q |
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| T |
3855320 |
tgtatgtccatttctcgaggatttactcataaaaaatgtcagcacccatgatgataatgatactcttgatgctcttgctaaacaaacagacgagttatta |
3855221 |
T |
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| Q |
222 |
gaacccttccccaatttgctcaaatcccacatttctgactcttcttct |
269 |
Q |
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| T |
3855220 |
gaacccttccccaatttgctcaaatcccacatttctgactcttcttct |
3855173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 61 - 269
Target Start/End: Original strand, 4141242 - 4141450
Alignment:
| Q |
61 |
aaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgt |
160 |
Q |
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| T |
4141242 |
aaaaactccacatgacaaaggttcattttctaaagcttaaatatcttattcagattctctctgtatgtccacttcttgaggatttgctcataaaaaatgt |
4141341 |
T |
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| Q |
161 |
cagcacccatgatgataatgatactcttgatgctcttgctaaacaaacagacgagttattagaacccttccccaatttgctcaaatcccacatttctgac |
260 |
Q |
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| T |
4141342 |
caccaccaatgatgataatgatactcttgatgctcttactaaacaaagagacaagttgttaaaacccttccccaaattgctcaaagcccacatttccgac |
4141441 |
T |
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| Q |
261 |
tcttcttct |
269 |
Q |
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| T |
4141442 |
tcttcttct |
4141450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 1881975 - 1882095
Alignment:
| Q |
40 |
ttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcga |
139 |
Q |
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| T |
1881975 |
ttactaatttgcccaacctcaaaaaactccacttcacaagggttcattttctaaagcttcaatttcttattaagattctctctgtatgtccgcttcttga |
1882074 |
T |
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| Q |
140 |
ggatttactcataaaaaatgt |
160 |
Q |
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| T |
1882075 |
ggatttactcatcaaaaatgt |
1882095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 41541770 - 41541889
Alignment:
| Q |
41 |
tactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcgag |
140 |
Q |
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| T |
41541770 |
tactaatttgcccaacctcaaaaaactccacttcacaagggttcattttccaaagcttcaatttcttattaagattctctccgtatgtccgcttcttgag |
41541869 |
T |
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| Q |
141 |
gatttactcataaaaaatgt |
160 |
Q |
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| T |
41541870 |
gatttactcatcaaaaatgt |
41541889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 41541946 - 41541991
Alignment:
| Q |
223 |
aacccttccccaatttgctcaaatcccacatttctgactcttcttc |
268 |
Q |
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| T |
41541946 |
aacccttccccaatttgctcaaagcccacatttctgactcttcttc |
41541991 |
T |
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