View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10202_low_13 (Length: 229)

Name: NF10202_low_13
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10202_low_13
NF10202_low_13
[»] chr4 (4 HSPs)
chr4 (1-229)||(32632232-32632460)
chr4 (90-206)||(22517356-22517472)
chr4 (54-174)||(56126116-56126244)
chr4 (97-222)||(20953578-20953705)
[»] chr7 (4 HSPs)
chr7 (97-222)||(30676449-30676574)
chr7 (102-222)||(30676593-30676714)
chr7 (116-176)||(20933277-20933337)
chr7 (127-218)||(20934317-20934407)
[»] chr2 (5 HSPs)
chr2 (93-201)||(21212400-21212508)
chr2 (97-222)||(21001004-21001127)
chr2 (97-175)||(12511826-12511904)
chr2 (89-218)||(33523839-33523967)
chr2 (83-138)||(5321374-5321429)
[»] chr8 (5 HSPs)
chr8 (97-176)||(22681271-22681350)
chr8 (104-211)||(16979319-16979423)
chr8 (102-175)||(22751684-22751757)
chr8 (83-168)||(43791737-43791820)
chr8 (101-147)||(35286758-35286804)
[»] chr1 (2 HSPs)
chr1 (102-218)||(19492261-19492377)
chr1 (116-163)||(36342435-36342482)
[»] chr5 (2 HSPs)
chr5 (89-218)||(33123092-33123220)
chr5 (104-176)||(22567692-22567764)
[»] scaffold0003 (1 HSPs)
scaffold0003 (97-218)||(242940-243059)
[»] chr6 (3 HSPs)
chr6 (91-224)||(19139371-19139501)
chr6 (89-211)||(17306177-17306296)
chr6 (102-176)||(17305038-17305112)
[»] scaffold0071 (1 HSPs)
scaffold0071 (110-218)||(58195-58303)
[»] chr3 (1 HSPs)
chr3 (123-195)||(48294784-48294856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (96-176)||(26409-26490)
[»] scaffold0380 (1 HSPs)
scaffold0380 (123-176)||(9262-9315)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32632232 - 32632460
Alignment:
Q  1 tcatacttgattccagtgttgacgatggcagatattaagatccaatatgagatggtgtttttattgatagtaatgaaaatatacgatgatagtagtagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32632232 tcatacttgattccagtgttgacgatggcagatattaagatccaatatgagatggtgtttttattgatagtaatgaaaatatacgatgatagtagtagag 32632331  T
Q  101 ggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32632332 ggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaact 32632431  T
Q  201 cctaaggattctcctttacatatatatat 229  Q
    |||||||||||||||||||||||||||||    
T  32632432 cctaaggattctcctttacatatatatat 32632460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 22517356 - 22517472
Alignment:
Q  90 tagtagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcct 189  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| |    
T  22517356 tagtagtagagggtttctctaactactcccagagcaaagctccgacacaactcagagaggaatcctactctggccctaaaccgaaaacctaatctgtcat 22517455  T
Q  190 actctagaactcctaag 206  Q
    |||| | ||||| ||||    
T  22517456 actccaaaactcataag 22517472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 56126116 - 56126244
Alignment:
Q  54 ggtgtttttattgatagtaatgaaaata-tacgatgatagtagtagagggt-------ttctccaactactcccagggcaaagctccgacacaactcaga 145  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||  |       ||||| ||||| |||||| | |||| |||||||||||||||     
T  56126116 ggtgcttttattgatagtaatgaaaatagtatgatgatagtagtagagattagagaatttctctaactattcccagagtaaagttccgacacaactcagt 56126215  T
Q  146 gaggaatcctactctggccctaaacagaa 174  Q
    ||||||||||||| | |||||||||||||    
T  56126216 gaggaatcctactttagccctaaacagaa 56126244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 20953705 - 20953578
Alignment:
Q  97 agagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaa--cagaaaatctattccgtcctactct 194  Q
    |||| ||||||| |||||||||||| ||||||||||||||||| ||  ||| ||||||||||||  |||||||   | ||||  |||||| || || |||    
T  20953705 agagagtttctctaactactcccagagcaaagctccgacacaattcgaagaagaatcctactctaaccctaaaataaaaaaacttattccttcatattct 20953606  T
Q  195 agaactcctaaggattctcctttacata 222  Q
    |||||||||||| ||||  |||||||||    
T  20953605 agaactcctaagaattcctctttacata 20953578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 30676574 - 30676449
Alignment:
Q  97 agagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctag 196  Q
    |||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||     
T  30676574 agagagtttctctaactactcccagagcaaagctccgactcaactcagagaggaatcctactctggccctaaacagaaaacttattccgtcctactctaa 30676475  T
Q  197 aactcctaaggattctcctttacata 222  Q
    ||||| |||| |||| ||||||||||    
T  30676474 aactcttaagaattcccctttacata 30676449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 30676593 - 30676714
Alignment:
Q  102 gtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaactc 201  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| |||||    
T  30676593 gtttctctaactactcccagagcaaagctccgactcaactcagagaggaatcctactctggccctaaacagaaaacttattccatcctactctaaaactc 30676692  T
Q  202 ct-aaggattctcctttacata 222  Q
     | ||| |||| ||||||||||    
T  30676693 ttaaagaattcccctttacata 30676714  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 20933277 - 20933337
Alignment:
Q  116 tcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaa 176  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  20933277 tcccagagcaaagctctgacacaactcagagaggaatcctactctagccctgaacagaaaa 20933337  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 20934317 - 20934407
Alignment:
Q  127 agctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaactcctaaggattctccttta 218  Q
    ||||||||||||||||||| |||||||||||  | |||||||| ||||||  ||||| ||| ||||||| |||||||||| |||| ||||||    
T  20934317 agctccgacacaactcagataggaatcctaccatagccctaaatagaaaacttattctgtcatactcta-aactcctaagaattcgccttta 20934407  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 21212400 - 21212508
Alignment:
Q  93 tagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctact 192  Q
    |||||||| ||||||| |||||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  21212400 tagtagagagtttctctaactactcccagagcgaagctccgatacaacttagagaggaatcctactctggccctaaacagaaaacttattccgtcatact 21212499  T
Q  193 ctagaactc 201  Q
    ||| |||||    
T  21212500 ctaaaactc 21212508  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 21001127 - 21001004
Alignment:
Q  97 agagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctag 196  Q
    |||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| ||| | ||||      
T  21001127 agagagtttctctaactactccctgagcaaagctccgacacaactcagagaggaatcctactctggccct-aacagaaaacttattctgtcat-ctctta 21001030  T
Q  197 aactcctaaggattctcctttacata 222  Q
    |||||||||| |||| ||||||||||    
T  21001029 aactcctaagaattcccctttacata 21001004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 12511826 - 12511904
Alignment:
Q  97 agagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaa 175  Q
    |||| ||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  12511826 agagagtttccctaactactcctagagcaaagctccgacacaactcagagaggaatcctactctggccttgaacagaaa 12511904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 33523839 - 33523967
Alignment:
Q  89 atagtagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcc 188  Q
    ||||||| |||| | ||||| ||||||||| || ||||| |||||| | |||||||||||||||||||||||||||||||||| ||||   | || |||     
T  33523839 atagtagaagagagattctctaactactcctagagcaaaactccgaaataactcagagaggaatcctactctggccctaaacaaaaaactcaatctgtca 33523938  T
Q  189 tactctagaactcctaaggattctccttta 218  Q
    ||||||| |||||||||| |||| ||||||    
T  33523939 tactcta-aactcctaagaattccccttta 33523967  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 5321374 - 5321429
Alignment:
Q  83 acgatgatagtagtagagggtttctccaactactcccagggcaaagctccgacaca 138  Q
    ||||| ||||| |||||||||||||| ||||||||| || |||||||||| |||||    
T  5321374 acgattatagtggtagagggtttctctaactactccaagagcaaagctccaacaca 5321429  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 22681350 - 22681271
Alignment:
Q  97 agagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaa 176  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22681350 agagagtttctctaactactcccagagcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaa 22681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 16979423 - 16979319
Alignment:
Q  104 ttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaactcct 203  Q
    ||||| |||||||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||     
T  16979423 ttctctaactactcccagagcaaagctccgacataactcagag--gaatcctactctggccctaaacagaaaacctattccgtcctattct-gaactcca 16979327  T
Q  204 aaggattc 211  Q
    ||| ||||    
T  16979326 aagaattc 16979319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 22751684 - 22751757
Alignment:
Q  102 gtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaa 175  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  22751684 gtttctctaactactcccagagcaaagctccgacacaactcagagaggaatcttactttggccctaaacagaaa 22751757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 43791820 - 43791737
Alignment:
Q  83 acgatgatagtagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaa 168  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||  ||||  |||||||| ||||||||||||||||||    
T  43791820 acgataatagtagtagagggtttctctaactactcccagagcaaagctccggaacaa--cagagaggtatcctactctggccctaa 43791737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 35286758 - 35286804
Alignment:
Q  101 ggtttctccaactactcccagggcaaagctccgacacaactcagaga 147  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||    
T  35286758 ggtttctctaactactcccagagcaaagctccgacacaactcagaga 35286804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 19492377 - 19492261
Alignment:
Q  102 gtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaactc 201  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||  | ||||||  || |||| |||||    
T  19492377 gtttctctaactactcccagtgcaaagctccgacacaactcagagaggaatcctactctagccctaaacagaaaacttgttccgttgtattctaaaactc 19492278  T
Q  202 ctaaggattctccttta 218  Q
    || || |||| ||||||    
T  19492277 ctgagaattccccttta 19492261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 36342435 - 36342482
Alignment:
Q  116 tcccagggcaaagctccgacacaactcagagaggaatcctactctggc 163  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||    
T  36342435 tcccagagcaaagctccgacacaactcagagaggaatcttattctggc 36342482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 33123220 - 33123092
Alignment:
Q  89 atagtagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcc 188  Q
    ||||||| |||| | ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||   | || |||     
T  33123220 atagtagaagagagattctctaactactcccagagcaaagctccgacactactcagagaggaatcctactctggccctgaacagaaaactcaatctgtca 33123121  T
Q  189 tactctagaactcctaaggattctccttta 218  Q
    ||||||| |||||||||| |||| ||||||    
T  33123120 tactcta-aactcctaagaattccccttta 33123092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 22567692 - 22567764
Alignment:
Q  104 ttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaa 176  Q
    ||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  22567692 ttctctaactactcccagagcaaagcttcgacacaactcatagaggaatcctactctggccctgaacagaaaa 22567764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 242940 - 243059
Alignment:
Q  97 agagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctag 196  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||| |   |||||||| |||||||||||||||||||  ||||||||| |||||||     
T  242940 agagagtttctctaactactcccagagcaaagctccgacacaactcataa--gaatcctaatctggccctaaacagaaaacttattccgtcatactctat 243037  T
Q  197 aactcctaaggattctccttta 218  Q
    ||||| |||| || ||||||||    
T  243038 aactcttaagaatactccttta 243059  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 19139501 - 19139371
Alignment:
Q  91 agtagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtccta 190  Q
    ||||| |||| ||||||| |||||||||||  |||||||||||||||||||  ||||||||||||||||| | |||||||| ||||  |||||||||| |    
T  19139501 agtagaagagagtttctctaactactcccaaagcaaagctccgacacaact--gagaggaatcctactctag-cctaaacataaaagttattccgtccaa 19139405  T
Q  191 ctctagaactcctaaggattctcctttacatata 224  Q
    ||||| |||||||||| |||  ||||||||||||    
T  19139404 ctctaaaactcctaagaatttccctttacatata 19139371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 17306296 - 17306177
Alignment:
Q  89 atagtagtagagggtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcc 188  Q
    ||||||| |||| ||||||| |||||||||||  ||||||||||  || || ||||||||||||| ||||||  ||||||| ||||||  |||| ||||     
T  17306296 atagtagaagagagtttctctaactactcccatagcaaagctcc--cataattcagagaggaatcatactctaaccctaaatagaaaacttatttcgtca 17306199  T
Q  189 tactctagaactcctaaggattc 211  Q
    ||||||| |||||||||| ||||    
T  17306198 tactcta-aactcctaagaattc 17306177  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 17305112 - 17305038
Alignment:
Q  102 gtttctccaactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaa 176  Q
    ||||||| |||||||||||| |||||||||| | | ||||  ||||||||||||||||||  |||||||||||||    
T  17305112 gtttctcaaactactcccagagcaaagctccaatataactttgagaggaatcctactctgatcctaaacagaaaa 17305038  T

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Target: scaffold0071 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 58303 - 58195
Alignment:
Q  110 aactactcccagggcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaactcctaaggat 209  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| || || ||| ||||||||| |||| ||| ||    
T  58303 aactactcccaaagcaaagctccgacataactcagagaggaatcctactatggcgctaaacagaaaatttagtctgtcatactctagatctcccaagaat 58204  T
Q  210 tctccttta 218  Q
    || ||||||    
T  58203 tccccttta 58195  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 48294856 - 48294784
Alignment:
Q  123 gcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactcta 195  Q
    |||||||||||||  |||||| |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  48294856 gcaaagctccgacgtaactcaaagaggaatcctactctggtcctaaacagaaaacttattccgtcctactcta 48294784  T

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Target: scaffold0025 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 26490 - 26409
Alignment:
Q  96 tagagggtttctccaactactcccagggcaaagctc--cgacacaactcagagaggaatcctactctggccctaaacagaaaa 176  Q
    |||||||||||||||||||| ||||| | |||||||  ||||||||||||||||||||||||||||| | |||||||||||||    
T  26490 tagagggtttctccaactacacccagaggaaagctctccgacacaactcagagaggaatcctactctag-cctaaacagaaaa 26409  T

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Target: scaffold0380 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 9262 - 9315
Alignment:
Q  123 gcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaa 176  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  9262 gcaaagctctgacacaactcagagaggaatcctactctggccctgaacagaaaa 9315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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