View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_low_14 (Length: 222)
Name: NF10202_low_14
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 50112085 - 50112274
Alignment:
| Q |
17 |
agaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatg |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
50112085 |
agaagtaaaaatcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatg |
50112184 |
T |
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| Q |
117 |
tgcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctac |
206 |
Q |
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| T |
50112185 |
tgcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctac |
50112274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 50121666 - 50121848
Alignment:
| Q |
17 |
agaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121666 |
agaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatg |
50121765 |
T |
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| Q |
117 |
tgcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctg |
202 |
Q |
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| T |
50121766 |
tgcataaggttttccac---cataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctg |
50121848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 23931118 - 23930936
Alignment:
| Q |
17 |
agaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatg |
116 |
Q |
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||||||||||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| ||||||||||| | |||| |||| |
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| T |
23931118 |
agaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcatg |
23931019 |
T |
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| Q |
117 |
tgcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctg |
202 |
Q |
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|||| || || |||| ||| |||||| |||||||| || | ||||||||| ||||||| ||||| || |||||||| |||| |
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| T |
23931018 |
tgcagaagcttttccac---cattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctg |
23930936 |
T |
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