View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_low_2 (Length: 501)
Name: NF10202_low_2
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 35406842 - 35406388
Alignment:
| Q |
17 |
atttaactgctacaaactcctcttttgcaacatagcgagcaagatatatcatgaaccaaatcatgtactttgaactagatttggaggtttgtcttctttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35406842 |
atttaactgctacaaactcctcttttgcaacatagagagcaagatatatcatgcaccaaatcatgtactttgaactagatttggaggtttgtcttcttcg |
35406743 |
T |
|
| Q |
117 |
tcttccttgaatacccatttctcaaacagagattagcaattttctatagaaaggctttttaaaacataggacggaacaatgcccatcatcaatgcaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406742 |
tcttccttgaatacccatttctcaaacagagattagcaattttctatagaaaggctttttaaaacataggacggaacaatgcccatcatcaatgcaattg |
35406643 |
T |
|
| Q |
217 |
aattgctgcatattgtcgccatgatcttgcttcccaatgtgctaacttttatcaaatatgtcaactcaatccattttacactatcatctaacacaagtaa |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35406642 |
aattgctgcattttgtcgccatgatcttgcttcccaatgtgctaacttttatcaaatatgtcaactcaatccattttacactatcatctaacactagtaa |
35406543 |
T |
|
| Q |
317 |
aaactttttaccatatagtttacgtctcagacgactttgtagttgcaactagctagataaacataaagtatcacttatgttgcaaaacacaaacttcagg |
416 |
Q |
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| T |
35406542 |
aaactttttaccatatagtttacgtctcagacgactttgtagttgcaactagctagataaacataaattatcacttatgttgcaaaacacaaacttcagg |
35406443 |
T |
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| Q |
417 |
tttaccatatttatgtctgtaattatttttcaattcactgacagttcaaaatgaa |
471 |
Q |
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| T |
35406442 |
tttaccatatttatgtctgtaattatttttcaattcactgacagttcaaaatgaa |
35406388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 89 - 358
Target Start/End: Original strand, 18117767 - 18118051
Alignment:
| Q |
89 |
aactagatttggaggtttgtcttctttgtcttccttgaatacccatttctcaaacagagattagcaattttctatagaaaggctttttaaaacataggac |
188 |
Q |
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||||||||||||| ||||||||||| | ||||||||||| |||||||| |||||| |||| | || ||||| |||||||||| ||||||||||||||| |
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| T |
18117767 |
aactagatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggag |
18117866 |
T |
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| Q |
189 |
ggaacaatgcccatcatcaatgcaattgaattgctgcatattgtcgccatgatcttgcttcccaatgtgctaacttttatcaaatatgtcaactcaatcc |
288 |
Q |
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| T |
18117867 |
ggaacagtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatcc |
18117966 |
T |
|
| Q |
289 |
attttacac---------------tatcatctaacacaagtaaaaactttttaccatatagtttacgtctcagacgactttgtag |
358 |
Q |
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| T |
18117967 |
attttacacaatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtag |
18118051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 18117295 - 18117366
Alignment:
| Q |
17 |
atttaactgctacaaactcctcttttgcaacatagcgagcaagatatatcatgaaccaaatcatgtactttgaact |
92 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| |||||| |||||| |||||||| ||||||||||||| |
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| T |
18117295 |
atttaaccactacaaactccttttttgcaacatagaaagcaag----atcatgtaccaaatcgtgtactttgaact |
18117366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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