View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_low_5 (Length: 419)
Name: NF10202_low_5
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_low_5 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 31 - 419
Target Start/End: Original strand, 6516685 - 6517073
Alignment:
| Q |
31 |
taacaccaagattcattttaataagctgagggccaagatgaaattaataaataaaactttctataggtctattgataagtttatgaggacctggatagga |
130 |
Q |
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| T |
6516685 |
taacaccaagattcattttaataagttgaggaccaagatgaaattaataaataaaactttctataggtctattgataagtttatgaagacctggatagga |
6516784 |
T |
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| Q |
131 |
gttagtgttatttgcaaatggaggaggagctgcgagtgatgggactgacgtcggtgatggtgacaacgacgaaggtgaatcttgtgttggttgataaaag |
230 |
Q |
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| T |
6516785 |
ggtagtgttatttgcaaatggaggaggagctgcgagtgatgggactgacgtcggtgatggtgacaacgacgaaggtgaatcttgtgttggttgataaaag |
6516884 |
T |
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| Q |
231 |
agtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcacccatcctgttgttacaacatattgcgatttcattgatagattgaacca |
330 |
Q |
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| T |
6516885 |
agtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcattgatagattgaacca |
6516984 |
T |
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| Q |
331 |
aacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctcatca |
419 |
Q |
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| T |
6516985 |
aacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctcatca |
6517073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 204 - 419
Target Start/End: Original strand, 6512459 - 6512674
Alignment:
| Q |
204 |
ggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcacccatcctgttgttacaacata |
303 |
Q |
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| T |
6512459 |
ggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatc |
6512558 |
T |
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| Q |
304 |
ttgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatt |
403 |
Q |
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| T |
6512559 |
ttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatatagtttgattattatt |
6512658 |
T |
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| Q |
404 |
tggaccaacctcatca |
419 |
Q |
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| T |
6512659 |
ttgaccaacctcatca |
6512674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 216 - 419
Target Start/End: Complemental strand, 6522165 - 6521962
Alignment:
| Q |
216 |
gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcacccatcctgttgttacaacatattgcgatttcat |
315 |
Q |
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| T |
6522165 |
gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt |
6522066 |
T |
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| Q |
316 |
tgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctc |
415 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||| |
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| T |
6522065 |
tgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacctc |
6521966 |
T |
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| Q |
416 |
atca |
419 |
Q |
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|||| |
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| T |
6521965 |
atca |
6521962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 183 - 411
Target Start/End: Original strand, 6506525 - 6506759
Alignment:
| Q |
183 |
ggtgatggtgacaacgacgaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcac |
282 |
Q |
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||||||| |||| | || |||||||||||||| ||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| ||| |
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| T |
6506525 |
ggtgatgatgacgatgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccac |
6506624 |
T |
|
| Q |
283 |
ccatcc------tgttgttacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagc |
376 |
Q |
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| || | | |||| |||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| | |
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| T |
6506625 |
ctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaac |
6506724 |
T |
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| Q |
377 |
tagaccatatatggtttgattattatttggaccaa |
411 |
Q |
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| T |
6506725 |
aagagcaaatatggtttgattattatttggaccaa |
6506759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6516632 - 6516666
Alignment:
| Q |
1 |
caaggatactaagacacggaaaatattttttaaca |
35 |
Q |
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| T |
6516632 |
caaggatactaagacacggaaattattttttaaca |
6516666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 47759914 - 47759955
Alignment:
| Q |
354 |
gacaaatcaggtgtgcattgagctagaccatatatggtttga |
395 |
Q |
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| T |
47759914 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
47759955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 183 - 411
Target Start/End: Original strand, 550 - 784
Alignment:
| Q |
183 |
ggtgatggtgacaacgacgaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcac |
282 |
Q |
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||||||| |||| | || |||||||||||||| ||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| ||| |
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| T |
550 |
ggtgatgatgacgatgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccac |
649 |
T |
|
| Q |
283 |
ccatcc------tgttgttacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagc |
376 |
Q |
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| || | | |||| |||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| | |
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| T |
650 |
ctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaac |
749 |
T |
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| Q |
377 |
tagaccatatatggtttgattattatttggaccaa |
411 |
Q |
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||| || ||||||||||||||||||||||||||| |
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| T |
750 |
aagagcaaatatggtttgattattatttggaccaa |
784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 183 - 411
Target Start/End: Original strand, 8203 - 8437
Alignment:
| Q |
183 |
ggtgatggtgacaacgacgaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcac |
282 |
Q |
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||||||| |||| | || |||||||||||||| ||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| ||| |
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| T |
8203 |
ggtgatgatgacgatgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccac |
8302 |
T |
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| Q |
283 |
ccatcc------tgttgttacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagc |
376 |
Q |
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| || | | |||| |||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| | |
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| T |
8303 |
ctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaac |
8402 |
T |
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| Q |
377 |
tagaccatatatggtttgattattatttggaccaa |
411 |
Q |
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||| || ||||||||||||||||||||||||||| |
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| T |
8403 |
aagagcaaatatggtttgattattatttggaccaa |
8437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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