View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10202_low_6 (Length: 409)
Name: NF10202_low_6
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 214 - 392
Target Start/End: Complemental strand, 11673266 - 11673088
Alignment:
| Q |
214 |
ttactgaataccaagatgaaatgagaaggttgttagaattaggcgcaaattgaattatgaaaatagcgtcactgattggaatcaacaatttctacgattt |
313 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11673266 |
ttactgaatcccaagatgaaatgagaaggttgttagaattaggcgcaaattgaattatgaaaatagcgtcactgattggaatcaacaatttctacgattt |
11673167 |
T |
|
| Q |
314 |
caatgtgatactttttgcattcattgttttttgccgtgaatagtgttgctgtgatttgaatttgaaacaacttagttct |
392 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11673166 |
caatgagatacttcttgcgttcattgttttttgcagtgaatagtgttgctgtgatttgaatttgaaacaatgtagttct |
11673088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 11673464 - 11673312
Alignment:
| Q |
17 |
cagagaaagaatcagaatcatcctcagagaagcaacaatcaagaagagcagctgctgaattcgcttgtaatctaaccacagaagcttccaaattgtataa |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||| |||| |
|
|
| T |
11673464 |
cagagaaagaaacagaatcatcctcagagaagcaacaatcaagaagagcagcttctgaattcgcttctaatctatccacagaagcatccaaattgcataa |
11673365 |
T |
|
| Q |
117 |
acgaagattctgaaaaccccacatcgaaaagtcgattcaattcagtgaaatgc |
169 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11673364 |
acgaagattctgcaaaacccacatcgaaaagtcgattcaattcagtgaaatgc |
11673312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 18915248 - 18915363
Alignment:
| Q |
17 |
cagagaaagaatcagaatcatcctcagagaagcaacaatcaagaagagcagctgctgaattcgcttgtaatctaaccacagaagcttccaaattgtataa |
116 |
Q |
| |
|
||||||||| | | ||||||||||||||||| |||||||||||||||| |||| ||||||| |||| |||||||||||||||||| || |||| ||| || |
|
|
| T |
18915248 |
cagagaaagcaacggaatcatcctcagagaaacaacaatcaagaagagaagcttctgaattagcttctaatctaaccacagaagcgtcgaaatcgtacaa |
18915347 |
T |
|
| Q |
117 |
acgaagattctgaaaa |
132 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18915348 |
acgaagattctgaaaa |
18915363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 18915458 - 18915617
Alignment:
| Q |
224 |
ccaagatgaaatgagaaggttgttagaattaggcgcaaattgaattatgaaaatagcgtcactgattggaatcaacaatttctacgatttcaatgtgata |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| || |||| || |||| ||||||||| ||| | ||| ||||||| ||| | || |
|
|
| T |
18915458 |
ccaagatgaaatgagaaggttgttagaattaggcccaaattgaattctggaaattgcatcaccgattggaattgacagtatcttcgatttcgatgagcta |
18915557 |
T |
|
| Q |
324 |
ctttttgcattcattgttttttgccgtgaatagtgttgctgtgatttgaatttgaaacaa |
383 |
Q |
| |
|
|||||| |||||| || ||||| ||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
18915558 |
ttttttgtgttcatttttgtttgcagtgaacaatgttgttgtgatttgaatttgaaacaa |
18915617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University