View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_low_8 (Length: 344)
Name: NF10202_low_8
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 37726972 - 37727279
Alignment:
| Q |
12 |
atgaaacacatcggattccaatttcaggnnnnnnnntccagaaaagaatgaaagacaaaaaggaataaatttgcatgctaagtaacagaaccacaaacca |
111 |
Q |
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| T |
37726972 |
atgaaacacatcggattccaatttcaggaaaaaaaatccagaaaagaatggaagacaaaaaggaataaatttgcatgctaagtaacagaaccacaaacca |
37727071 |
T |
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| Q |
112 |
gacatggatctgcaatacnnnnnnncgccataaatctaaaacactgacaaaaacaacggcaacaacaagaacatcatgaaagcagctagaaggtctaact |
211 |
Q |
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| T |
37727072 |
gacatggatctgcaatacaaaaaaacgccataaatctaaaacactgacaaaaacaacg-caacaacaagaacatcatgaaagcagctagaaggtctaact |
37727170 |
T |
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| Q |
212 |
tatttagtttatttagttaatgtgtttcaatacccgcagaagttatgctagtgaaaacgttaaattccaatcttggatatacttaacaactacatttata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37727171 |
tatttagtttatttagttaatgtgtttcaatacccgcagaagttatgctagtgaaaacgttaaattccaatcttggatatacttaacaactacatttata |
37727270 |
T |
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| Q |
312 |
ttgttttgt |
320 |
Q |
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| T |
37727271 |
ttgttttgt |
37727279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 34809888 - 34809817
Alignment:
| Q |
48 |
tccagaaaagaatgaaagacaaaaaggaataaatttgcatgctaagtaacagaaccacaaaccagacatgga |
119 |
Q |
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||||||||| |||| | |||||||||||||||||| |||||| | ||||||| ||||||||| | |||||| |
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| T |
34809888 |
tccagaaaaaaatgtacaacaaaaaggaataaattttcatgctcaataacagacccacaaaccggtcatgga |
34809817 |
T |
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