View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10202_low_9 (Length: 305)
Name: NF10202_low_9
Description: NF10202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10202_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 1193178 - 1193035
Alignment:
| Q |
1 |
taatggaataacaacattcaagagctttccttgataatgtttgtaaaattaaaacgtgcaggaagagaggagaaagtaattattttccataaatgaaagg |
100 |
Q |
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| T |
1193178 |
taatggaataacaacattgaagagctttccttgataatgtttgtaaaattaaaacgtgcaggaagagaggagaaagtaattattttccttaaatgaaagg |
1193079 |
T |
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| Q |
101 |
gagaaaaatcagattttgtttggaatcattaaagaaggattatg |
144 |
Q |
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| T |
1193078 |
gagaaaaatcagattttgtttggaatcattaaagaaggattatg |
1193035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 1192910 - 1192815
Alignment:
| Q |
187 |
ttgaaacataccaggggagagagatatggaaataaaggagtagtggaaatcatagatagatactgaagaaaataaggaatgggttattctagagaaaaat |
286 |
Q |
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| T |
1192910 |
ttgaaacataccaggggagagagtaatggaaataaaggagtagtggaaatcata----gataccgaagaaaataaggaataggttattctaaagaaaaat |
1192815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 1193007 - 1192959
Alignment:
| Q |
139 |
attatgagagagggaatatggcgtgttatactgttatatatatgtgttt |
187 |
Q |
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| T |
1193007 |
attatgagagagggaatatggcgtgttatactgttatatatatgtgttt |
1192959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 17543424 - 17543506
Alignment:
| Q |
59 |
caggaagagaggagaaagtaattattttccataaatgaaagggagaaaaatcagattttgtttggaatcattaaagaaggattatg |
144 |
Q |
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| T |
17543424 |
caggaagagagaagaaagtaattcttttccttaaatgagaga---aaaaatcagattctgtttggaagcattaaagaaggattatg |
17543506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 52016353 - 52016309
Alignment:
| Q |
100 |
ggagaaaaatcagattttgtttggaatcattaaagaaggattatg |
144 |
Q |
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| T |
52016353 |
ggaggaaaatcagattttgtttggaatcattaaggaatgattatg |
52016309 |
T |
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