View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10203_high_1 (Length: 581)
Name: NF10203_high_1
Description: NF10203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10203_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 1647301 - 1646751
Alignment:
| Q |
18 |
gaagcaccagcagttcttgcagtgatctcaagtctctttctagcaatggaggaggaacaacttttgttgtcacctaggaaggatcctgaaacaccccttt |
117 |
Q |
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| T |
1647301 |
gaagcaccagcagttcttgcagtgatctcaagtctctttctagcaatggaggaggaaccacttttgttgtcacctaggaacgatcctgaaacaccccttt |
1647202 |
T |
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| Q |
118 |
tggcttcatgaagtgagagccctagcaaagatgttttctgcatatacatacaatagct-----------ca--------atgattttaaattgtatttgt |
198 |
Q |
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| T |
1647201 |
tggcttcatgaagtgagagccctagcaaagatgttttctgcata-acatacaatagcaagactaaaaagcattaaagacatgattttaaattgtatttgt |
1647103 |
T |
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| Q |
199 |
gttgagctcaatgattaatgaacttcaatcaaagattagttgttcgagaaaacccgagttcaaatcctgaccagaacgatatttgatcagactttactta |
298 |
Q |
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| T |
1647102 |
gttgagctcaatgattaatgaacttcaatcaaagattaattgttcgagaaaacccgagttcaaatcctgaccagaacgatatttgatcagactttactta |
1647003 |
T |
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| Q |
299 |
cttaccgacgacccaggtaatcatgcaaagaaaagaagagtacctgacatggaggagtgagtgtcttggaaggtctgatgtgagtgtttttgatggagtg |
398 |
Q |
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| T |
1647002 |
cttaccgac----caggtaatcatgcaaagaaaagaagagtacctgacatggaggagtgagtgtcttggaaggtctgatgtgagtgtttttgatggagtg |
1646907 |
T |
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| Q |
399 |
gttacttcttgtggtgaaagtggcagaggaggtacctgcaagcatagctgacattgttccttgtggatagaaaggaagtacttcaacaccaaaacaactg |
498 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
1646906 |
gttactccttgtggtgaaagtggcagaggaggtacctgcaagcatagctgacattgttccttgtggatagaaaggaaggaattcaacaccaaaacaactg |
1646807 |
T |
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| Q |
499 |
attcttttgaagaaaataatgaataaactaaagcatgcaagaggattttaaattgt |
554 |
Q |
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| T |
1646806 |
agtcttttgaagaaaataatgaataaactaaagcatgcaagaggattttaaattgt |
1646751 |
T |
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