View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10203_high_2 (Length: 247)

Name: NF10203_high_2

Description: NF10203

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10203_high_2

[»] chr7 (5 HSPs)

Alignment Details

Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 206; E-Value: 1e-113

Query Start/End: Original strand, 10 - 247

Target Start/End: Original strand, 22040465 - 22040702

Alignment:

Q	10	atgaactgagaaaactttggcatagatacttcattgaatgaactgagagattctcttaagatgtttagaacatgccaatgtttttgcaaatccacaacta	109	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	22040465	atgaactgagaaaactttggcatagatacttgattgaatgaactgagagatcctcttaagatgtttagaacatgccgatgtttttgcaaatccacaatta	22040564	T

Q	110	ttgtatattactgtattttgtttaaatggtcggtgcacatccaccctgatttgcagagcaagaacaattttactctatttattttcttgttcttgataat	209	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22040565	ttgtatattcctctattttgtttaaatggtcggtgcacatccaccctgatttgcagagcaagaaccattttactctatttattttcttgttcttgataat	22040664	T

Q	210	aatgctgctatagactctagtttttgatatgcactcac	247	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22040665	aatactgctatagactctagtttttgatatgcactcac	22040702	T

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Target: chr7; HSP #2

Raw Score: 86; E-Value: 3e-41

Query Start/End: Original strand, 38 - 239

Target Start/End: Original strand, 22037602 - 22037797

Alignment:

Q	38	cttcattgaatgaactgagagattctcttaagatgtttagaacatgccaatgtttttgcaaatccacaactattgtatattactgtattttgtttaaatg	137	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22037602	cttcgttgaatgaactgagagatcgtctcaagatgtttagaccatgtcgatgtttttgaaaatccacaattattgtatattcttctattttgtttaaatg	22037701	T

Q	138	gtcggtgcacatccaccctgatttgcagagcaagaacaattttactctatttattttcttgttcttgataataatgctgctatagactctagtttttgat	237	Q
		\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	22037702	gtcggt--acat----gctgatttgcagagtgagaaccattttactttatatatattcttgttcttgataataatgctgctatggagtctaggttttgat	22037795	T

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Target: chr7; HSP #3

Raw Score: 46; E-Value: 2e-17

Query Start/End: Original strand, 145 - 239

Target Start/End: Original strand, 22011555 - 22011653

Alignment:

Q	145	cacatccaccctgatttgcagagcaagaacaattttactctatttattttcttgttcttgata----ataatgctgctatagactctagtttttgatat	239	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22011555	cacatccacgctgatttgcagagcgcgaaccattttacttgatttatattcttgttcttgataatatataattctgctatagaatctagtttttgatat	22011653	T

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Target: chr7; HSP #4

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 146 - 239

Target Start/End: Original strand, 18323794 - 18323890

Alignment:

Q	146	acatccaccctgatttgcagagcaagaacaattttactctatttattttcttgttcttgataataatgctg---ctatagactctagtttttgatat	239	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	18323794	acatccacattgatttgctgcgcaagaatcattttattttatttatattcttgttcttgataatgatgctgctactatagaatctagtttttcatat	18323890	T

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Target: chr7; HSP #5

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 196 - 239

Target Start/End: Original strand, 22029241 - 22029284

Alignment:

Q	196	ttgttcttgataataatgctgctatagactctagtttttgatat	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	22029241	ttgttcttgataacaatgctgctatagaatctagtttttaatat	22029284	T

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