View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10203_low_1 (Length: 597)
Name: NF10203_low_1
Description: NF10203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10203_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 10575972 - 10576553
Alignment:
| Q |
1 |
actattgtaagctattaagttctgtgttgaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacgtcttgtcctaacgaagacc |
100 |
Q |
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| T |
10575972 |
actattgtacgctattaagttctgtgttcaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacttcttgtcccaaagaagacc |
10576071 |
T |
|
| Q |
101 |
cacatttttatagtgggtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcctggtggccaat |
200 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10576072 |
cacattcttatagtgagtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcctggtggccaat |
10576171 |
T |
|
| Q |
201 |
gaattgcatatgcaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgcttcagttcaaag |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10576172 |
gaattgcatatacaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgcttcagttcaaag |
10576271 |
T |
|
| Q |
301 |
acttccacttctacagcctctacttccatattccggcgag-nnnnnnnccaccaatgttcaacctcttatgacaaaatgaaagcaccaaaggaataacag |
399 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10576272 |
acttccacttctacagcctctgcttccatattccggcgagttttttttccaccaatgttcaacctcttctgacaaaatgaaagcaccaaaggaataacag |
10576371 |
T |
|
| Q |
400 |
aagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcaaaattttgaaggaaaaggaataacagaggagaggagaaaagagttcttgtcacaatt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10576372 |
aagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcagaattttgaaggaaaaggaataacagaggagaggagaaaagagttcttgtcacaatt |
10576471 |
T |
|
| Q |
500 |
catgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctctggggaccctttgatgt |
582 |
Q |
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| T |
10576472 |
catgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctct-gggaccctttgatgt |
10576553 |
T |
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