View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10204_1 (Length: 1017)

Name: NF10204_1
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10204_1
NF10204_1
[»] chr4 (30 HSPs)
chr4 (561-1016)||(4151012-4151462)
chr4 (125-568)||(4150525-4150969)
chr4 (889-1005)||(5199007-5199124)
chr4 (908-1005)||(4848600-4848698)
chr4 (69-126)||(4150112-4150169)
chr4 (206-347)||(21569299-21569440)
chr4 (1-50)||(41039083-41039132)
chr4 (1-48)||(51356934-51356981)
chr4 (206-281)||(21570415-21570490)
chr4 (7-45)||(8819636-8819674)
chr4 (876-949)||(13134849-13134922)
chr4 (1-46)||(38951375-38951420)
chr4 (9-50)||(42555081-42555122)
chr4 (206-346)||(31205636-31205776)
chr4 (1-49)||(40715175-40715223)
chr4 (196-248)||(42698686-42698738)
chr4 (7-49)||(23626606-23626648)
chr4 (886-940)||(29866075-29866129)
chr4 (7-49)||(36465148-36465190)
chr4 (1-50)||(22278060-22278109)
chr4 (206-346)||(31204603-31204743)
chr4 (1-41)||(40572221-40572261)
chr4 (418-465)||(31205630-31205677)
chr4 (879-1005)||(49583163-49583289)
chr4 (422-481)||(54373877-54373936)
chr4 (207-281)||(26045182-26045255)
chr4 (7-49)||(47223056-47223098)
chr4 (207-281)||(47243983-47244056)
chr4 (1-50)||(24916600-24916649)
chr4 (207-248)||(43709900-43709940)
[»] chr7 (18 HSPs)
chr7 (206-367)||(46196905-46197066)
chr7 (195-359)||(16957320-16957484)
chr7 (206-367)||(46203560-46203721)
chr7 (210-279)||(16955745-16955814)
chr7 (1-53)||(5972727-5972779)
chr7 (206-347)||(23153556-23153697)
chr7 (1-46)||(23810007-23810052)
chr7 (1-49)||(27336693-27336741)
chr7 (1-49)||(38440770-38440818)
chr7 (1-50)||(33189143-33189192)
chr7 (206-281)||(47535708-47535783)
chr7 (7-46)||(7766814-7766853)
chr7 (7-49)||(22519526-22519568)
chr7 (205-346)||(35045821-35045962)
chr7 (1-44)||(1053409-1053453)
chr7 (1-45)||(2944398-2944442)
chr7 (1-49)||(11039516-11039564)
chr7 (207-281)||(33070655-33070728)
[»] chr3 (11 HSPs)
chr3 (1-50)||(4127750-4127799)
chr3 (1-49)||(12148783-12148831)
chr3 (7-49)||(13825659-13825701)
chr3 (1-49)||(21287866-21287914)
chr3 (1-49)||(25875036-25875084)
chr3 (1-41)||(5294979-5295019)
chr3 (5-49)||(48251980-48252024)
chr3 (214-346)||(27226466-27226598)
chr3 (206-346)||(50003150-50003290)
chr3 (207-282)||(39530845-39530919)
chr3 (418-465)||(50002561-50002608)
[»] chr1 (13 HSPs)
chr1 (1-50)||(25294253-25294302)
chr1 (1-49)||(48379419-48379467)
chr1 (878-963)||(32900333-32900418)
chr1 (1-49)||(2192115-2192163)
chr1 (1-45)||(15378687-15378731)
chr1 (1-49)||(19884735-19884783)
chr1 (6-49)||(17563117-17563160)
chr1 (207-281)||(43808514-43808587)
chr1 (5-46)||(31585563-31585604)
chr1 (1-46)||(47140542-47140587)
chr1 (207-281)||(9822701-9822774)
chr1 (7-49)||(29678653-29678695)
chr1 (7-49)||(38264656-38264698)
[»] scaffold0115 (1 HSPs)
scaffold0115 (1-49)||(21815-21863)
[»] chr6 (18 HSPs)
chr6 (1-49)||(8576501-8576549)
chr6 (206-273)||(18230371-18230438)
chr6 (1-52)||(32292710-32292761)
chr6 (3-49)||(34435130-34435176)
chr6 (234-363)||(1948795-1948924)
chr6 (3-49)||(35168043-35168089)
chr6 (207-248)||(24317099-24317140)
chr6 (5-50)||(28581898-28581943)
chr6 (1-44)||(10788326-10788369)
chr6 (1-34)||(5999308-5999341)
chr6 (5-45)||(642390-642430)
chr6 (207-347)||(1757421-1757560)
chr6 (1-49)||(7622115-7622163)
chr6 (207-281)||(1692124-1692196)
chr6 (418-465)||(13562217-13562264)
chr6 (272-359)||(18230451-18230538)
chr6 (207-352)||(13561328-13561473)
chr6 (207-248)||(25437833-25437873)
[»] chr5 (17 HSPs)
chr5 (1-49)||(39800733-39800781)
chr5 (1-47)||(39207427-39207473)
chr5 (3-49)||(40056734-40056780)
chr5 (8-49)||(33743048-33743089)
chr5 (1-45)||(35188925-35188969)
chr5 (5-52)||(23428982-23429029)
chr5 (205-248)||(42963240-42963283)
chr5 (206-353)||(42962072-42962219)
chr5 (417-465)||(42962171-42962219)
chr5 (207-281)||(39135641-39135714)
chr5 (876-965)||(6329123-6329212)
chr5 (207-281)||(11907154-11907227)
chr5 (207-281)||(4904254-4904326)
chr5 (207-293)||(39050738-39050824)
chr5 (206-346)||(8358217-8358357)
chr5 (207-347)||(38603676-38603816)
chr5 (1-34)||(42836748-42836781)
[»] chr8 (9 HSPs)
chr8 (1-50)||(8227557-8227606)
chr8 (1-50)||(36583218-36583267)
chr8 (1-49)||(31005767-31005815)
chr8 (11-50)||(9766107-9766146)
chr8 (7-46)||(11481187-11481226)
chr8 (1-50)||(6870816-6870865)
chr8 (207-347)||(23767927-23768066)
chr8 (1-44)||(7987555-7987598)
chr8 (207-352)||(12820020-12820164)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-49)||(7668-7716)
[»] chr2 (9 HSPs)
chr2 (1-49)||(42625343-42625391)
chr2 (1-49)||(13807323-13807371)
chr2 (1-45)||(45151551-45151595)
chr2 (206-347)||(371893-372034)
chr2 (1-46)||(5938489-5938534)
chr2 (1-40)||(13626626-13626665)
chr2 (1-48)||(42604217-42604264)
chr2 (7-49)||(5109959-5110000)
chr2 (207-281)||(33553358-33553431)
[»] scaffold0057 (1 HSPs)
scaffold0057 (7-47)||(66350-66390)
[»] scaffold0155 (1 HSPs)
scaffold0155 (6-49)||(7210-7253)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 561 - 1016
Target Start/End: Original strand, 4151012 - 4151462
Alignment:
Q  561 aaatcgaactagatttgtttgattttcaatttttaaattcaatgatccgatgaattggatcaattgtgttactaaacccactttgatttaatccaaaccc 660  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||    
T  4151012 aaatccaactagatttgtttggttttcaatttttaaattcaatgatccgatgaattgaatcaattgtgttactaaatccactttgacttaatccgaaccc 4151111  T
Q  661 aatgctttatatctttccannnnnnnnnnnnnnnnnnngatagtatccatgaatgttttgctccattttaacggagtgaataaaagttacgaaaacaacc 760  Q
    |||||||||||||||||||                   |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4151112 aatgctttatatctttccatctcttctcttctc-----gatagtgtccatgaatgtttttttccattttaacggagtgaataaaagttacgaaaacaacc 4151206  T
Q  761 aagacaaaacattgttataccacgacaaaagcccgttatggccgctgttcccaaaaggtagttcgagaatcaagttttatggataaaatctagatttata 860  Q
     ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4151207 gagacaaaacattgctataccacgacaaaagtccgttatggccactgttcccaaaaggtagttcgagaatcaagttttatggataaaaactagatttata 4151306  T
Q  861 taaaccttaactccattttagaagtaacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaatgagaaatttggttatt 960  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4151307 taaaccttaactccattttagaagtaacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaacgagaaatttgattatt 4151406  T
Q  961 atacactatatggtgtacaaataattttaataagatttatgcaatatcgtgatgat 1016  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4151407 atacattatatggtgtacaaataattttaataagatttatgcaatatcgtgatgat 4151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 125 - 568
Target Start/End: Original strand, 4150525 - 4150969
Alignment:
Q  125 ttattaatatacttcatttaatatttaagtttaatcgattatcaatcatttaacttaattcnnnnnnnnn---aaattgattatctaactattaaacgtt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            ||||||||||| |||||||||||||||    
T  4150525 ttattaatatacttcatttaatatttaagtttaatcgattatcaatcctttaacttaattcttttttttttttaaattgattatttaactattaaacgtt 4150624  T
Q  222 tcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattagttaaagtaggttcatg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4150625 tcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattagttaaagtaggttcatg 4150724  T
Q  322 agatctaacggtgcatcaccaacaccaaattaagtttaattttattttattcatcttcctcccatatcttcaacnnnnnnnncaannnnnnnctttaatt 421  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||         ||       ||||||||    
T  4150725 agatctagcggtgcatcaccaacacgaaattaagtttaattttattttattcatcttcttcccacatcttcaacaaaaaaa--aaaaaaattctttaatt 4150822  T
Q  422 aggtgttggtgttacaccattagatcttatggatctcctttatctagtggtctccttttcgagtttgagtttggaggttcaactctgtaaagttgtttgc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  4150823 aggtgttggtgttacaccattagatcttatggatctcctttatctagtggtctccttttcgagtttgagtttggaggctcaactttgtaaagttgtttgc 4150922  T
Q  522 accacccaatggacgccgataaatgtaagtgatttgaacaaatcgaa 568  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  4150923 accacccaatggacgcccataaatgtaagtggtttgaacaaatcgaa 4150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 889 - 1005
Target Start/End: Complemental strand, 5199124 - 5199007
Alignment:
Q  889 aaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaatgagaaatttggttattatacactatatggt-gtacaaataattt 987  Q
    |||||||||  ||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||  ||||||||||| |||||| |  || |||||||||    
T  5199124 aaattcattacaaaattatgaaaagaattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataattt 5199025  T
Q  988 taataagatttatgcaat 1005  Q
    |||||| |||| ||||||    
T  5199024 taataatatttgtgcaat 5199007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 908 - 1005
Target Start/End: Original strand, 4848600 - 4848698
Alignment:
Q  908 gaaaataattagagttatgaaattatgaagaaacaatgagaaatttggttattatacactatatggt-gtacaaataattttaataagatttatgcaat 1005  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||  ||||||||||| |||||| | ||| ||||||||||||||| |||| ||||||    
T  4848600 gaaaagaattattgttatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataattttaataatatttgtgcaat 4848698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 4150112 - 4150169
Alignment:
Q  69 tattttttcttgaaagagtgaacttatgagagattgatggcaaaaaataattggggtt 126  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  4150112 tattttttcttgaaagagtcaacttatgagagatggatggcaaaaaataattgtggtt 4150169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 206 - 347
Target Start/End: Original strand, 21569299 - 21569440
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattag 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||   | ||  |||||||| ||||||||||| |  ||||||||  | ||| || |    
T  21569299 ctaactattaaacgtttcaatttggtcatttatctttgttttcatcatctatttaatcatattttattaattttaaacctctcaaaaagaagaccgttgg 21569398  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacacc 347  Q
     ||||| |||| ||| ||||||||| ||| ||||| ||||||    
T  21569399 ataaaggaggtccatcagatctaacagtgtatcactaacacc 21569440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41039132 - 41039083
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41039132 acacggatatcacattatccgcatccatggatatccatttacatccctag 41039083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 51356981 - 51356934
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccct 48  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  51356981 acacagatatcacactatccgcatccatggatatccatttacatccct 51356934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 21570490 - 21570415
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaa 281  Q
    ||||||||||||||||||||||| ||||||||||||||||||| || ||||| ||| || ||||| |||||||||||    
T  21570490 ctaactattaaacgtttcaatttggtcatttatctttgttttcatc-atcaatttgatcctattttattaattttaa 21570415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 8819636 - 8819674
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatc 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8819636 atatcacactatccgcatccatggatatccatttacatc 8819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 876 - 949
Target Start/End: Original strand, 13134849 - 13134922
Alignment:
Q  876 ttttagaagtaacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaatgagaa 949  Q
    |||||||||||| |||||||||  || ||||| |||||||||| |||||| |||||||||| | ||||||||||    
T  13134849 ttttagaagtaataaattcattataaggttataaaaataattacagttattaaattatgaaaacacaatgagaa 13134922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38951420 - 38951375
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcc 46  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  38951420 acacgaatatcacactctccgcatccatggatatccatttacatcc 38951375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 42555122 - 42555081
Alignment:
Q  9 atcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  42555122 atcacactatccgcatccatggatatccatctacatccctag 42555081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 346
Target Start/End: Complemental strand, 31205776 - 31205636
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattag 305  Q
    ||||||||||||||||||||  | ||| ||||||||||||||  | | | | |||||||||||| ||||||||||| || || |||||  | ||  || |    
T  31205776 ctaactattaaacgtttcaaaatggtcctttatctttgttttaattattaatttggtcatattttattaattttaaactccttaaaaagaagacatttgg 31205677  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacac 346  Q
     ||||| || | ||| ||||||||||||| |||||||||||    
T  31205676 ataaaggagatccatcagatctaacggtgtatcaccaacac 31205636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40715175 - 40715223
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  40715175 acacgaatatcacactatctgcatccttggatatccatttacatcccta 40715223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 42698738 - 42698686
Alignment:
Q  196 aattgattatctaactattaaacgtttcaatttagtcatttatctttgttttc 248  Q
    ||||||| || ||| |||||||||||||||||| |||||||||||||||||||    
T  42698738 aattgatcatttaattattaaacgtttcaatttggtcatttatctttgttttc 42698686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 23626648 - 23626606
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  23626648 atatcacactatttgcatccatggatatccatttacatcccta 23626606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 886 - 940
Target Start/End: Original strand, 29866075 - 29866129
Alignment:
Q  886 aacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaa 940  Q
    ||||||||||||| ||| ||||||||| ||||| || ||||||||||||||||||    
T  29866075 aacaaattcattgcaaaattatgaaaagaattacaggtatgaaattatgaagaaa 29866129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 36465148 - 36465190
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  36465148 atatcacactatccgcatccgtagatatccatttacatcccta 36465190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22278109 - 22278060
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||| | ||||  |||||||||||||||||||||||||||||    
T  22278109 acacggatatcataatatctacatccatggatatccatttacatccctag 22278060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 346
Target Start/End: Original strand, 31204603 - 31204743
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagataccatta 304  Q
    ||||||||||||||||||||  | ||||||||||||| ||||  || ||||| |||||| ||||| ||||||||||| || || |||||  | ||| ||     
T  31204603 ctaactattaaacgtttcaaaatggtcatttatctttattttaatc-atcaatttggtcctattttattaattttaaactccttaaaaagaagaccgttg 31204701  T
Q  305 gttaaagtaggttcatgagatctaacggtgcatcaccaacac 346  Q
    | ||||| | || ||| ||||||||| ||| |||||||||||    
T  31204702 gataaaggatgtccatcagatctaacagtgtatcaccaacac 31204743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40572221 - 40572261
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccattta 41  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  40572221 acacgaatatcacactatccacatccatggatatccattta 40572261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 465
Target Start/End: Original strand, 31205630 - 31205677
Alignment:
Q  418 aattaggtgttggtgttacaccattagatcttatggatctcctttatc 465  Q
    ||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  31205630 aattatgtgttggtgatacaccgttagatctgatggatctcctttatc 31205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 879 - 1005
Target Start/End: Complemental strand, 49583289 - 49583163
Alignment:
Q  879 tagaagtaacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaatgagaaatttggttattatacactatatggt-gta 977  Q
    |||||| || |||||||||   || ||||||||||||||| | | ||||||||| ||||||| |||||||||||  | ||||||||| |||| | | |||    
T  49583289 tagaagaaataaattcattactaaattatgaaaataattacact-atgaaattaagaagaaataatgagaaattaagctattatacaatataagatagta 49583191  T
Q  978 caaataattttaataagatttatgcaat 1005  Q
     || ||||||| |||||| |||||||||    
T  49583190 taattaatttttataagacttatgcaat 49583163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 481
Target Start/End: Original strand, 54373877 - 54373936
Alignment:
Q  422 aggtgttggtgttacaccattagatcttatggatctcctttatctagtggtctccttttc 481  Q
    ||||||||||| |||||  ||||||||||| || ||| |||||| |||||||||||||||    
T  54373877 aggtgttggtgatacacagttagatcttatagacctcatttatccagtggtctccttttc 54373936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 26045182 - 26045255
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa 281  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||   | ||||||  |||| |||||||||||    
T  26045182 taactattaaacgtttcaatttagtc-cttatctttgttttcgtcatcgatttggtccaattttattaattttaa 26045255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 47223098 - 47223056
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  47223098 atatcatactatccgcactcatggatatccatttacatcccta 47223056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 47244056 - 47243983
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa 281  Q
    |||||||||||| ||||||||| ||| || |||||||||||| |||   | |||||||||||| |||||||||||    
T  47244056 taactattaaacatttcaatttggtcctt-atctttgttttcgtcatcgatttggtcatattttattaattttaa 47243983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24916649 - 24916600
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||| |||||| || ||||||||||||||||| |||| ||||    
T  24916649 acacggatatcatactatctgcgtccatggatatccatttgcatctctag 24916600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 43709940 - 43709900
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttc 248  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  43709940 taactattaaacgtttcaatttggtc-tttatctttgttttc 43709900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 206 - 367
Target Start/End: Original strand, 46196905 - 46197066
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattag 305  Q
    |||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||| || ||||||      
T  46196905 ctaactattaaatgttttaatttggtcgtttatctttgttttcctcaatcaattggtcctatttcattaattttaatttgcttgaaaaggagaccattga 46197004  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaattaagtttaattttatt 367  Q
     || || |||| ||| |||||||||||||||||| ||||||| |||||| ||||||||||||    
T  46197005 atatagaaggtccataagatctaacggtgcatcatcaacacctaattaattttaattttatt 46197066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 195 - 359
Target Start/End: Complemental strand, 16957484 - 16957320
Alignment:
Q  195 aaattgattatctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaa 294  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||      
T  16957484 aaattgattctctaactattaaacgtttcaatttggtcctttatttttgttttcctcaatcaattggtcatatttcattaattctaatcggctaaaaatg 16957385  T
Q  295 gataccattagttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaattaagttta 359  Q
     | ||| |||| ||||| || ||| | |||| |||||||| |||||||||||  |||||| ||||    
T  16957384 aagaccgttagataaaggagattcgtaagatgtaacggtgtatcaccaacacataattaatttta 16957320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 206 - 367
Target Start/End: Complemental strand, 46203721 - 46203560
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattag 305  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| |  || |||| || || ||| |    
T  46203721 ctaactattaaacgttttaatttagtcttttatctttgttttcttcgatcaattggtcttatttcattaattttaatatattcgaaaatgagactattgg 46203622  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaattaagtttaattttatt 367  Q
     ||||  || |  || | ||||||||||| |||||||||| | |||||| ||||||||||||    
T  46203621 ataaaagagatctataaaatctaacggtgtatcaccaacatctaattaattttaattttatt 46203560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 16955745 - 16955814
Alignment:
Q  210 ctattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaatttt 279  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||| ||||    
T  16955745 ctattaaacgtttcaatttggtcatttatctttgttttcctcgatcaattgatcctatttcattattttt 16955814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5972779 - 5972727
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctaggtg 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5972779 acacggatatcacactatccgcattcatggatatccatttacatccctaggtg 5972727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 23153697 - 23153556
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagataccatta 304  Q
    ||||||||||||||||||||||| ||||||||||||||||||  || ||||| ||  |||||||| ||||||||||| |  ||||||||  | ||  ||     
T  23153697 ctaactattaaacgtttcaatttggtcatttatctttgtttttatc-atcaatttaatcatattttattaattttaaacctctcaaaaagaagactgttg 23153599  T
Q  305 gttaaagtaggttcatgagatctaacggtgcatcaccaacacc 347  Q
    | ||||| |||| ||| ||||||||||||| ||||| ||||||    
T  23153598 gataaaggaggtccatcagatctaacggtgtatcactaacacc 23153556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23810007 - 23810052
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcc 46  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23810007 acacggatatcgcactatccgcatccatggatatccatttacatcc 23810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27336741 - 27336693
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27336741 acacggatatcacactatctgcatccatggacatccatttacatcccta 27336693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38440770 - 38440818
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  38440770 acacgaatatcacactatccgcatccatggatattcatttacatcccta 38440818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33189192 - 33189143
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  33189192 acacggatatcaaactatctgcatccatagatatccatttacatccctag 33189143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 47535708 - 47535783
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaa 281  Q
    ||||||||||||||||||||||| ||| ||||||||||||||  || ||||| |||||| ||||| |||||||||||    
T  47535708 ctaactattaaacgtttcaatttggtcctttatctttgtttttatc-atcaatttggtcctattttattaattttaa 47535783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 7766853 - 7766814
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcc 46  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7766853 atatcacactatccgcatccatgtatatccatttacatcc 7766814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 22519526 - 22519568
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  22519526 atattacactatccgtatccatggatatccatttacatcccta 22519568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 346
Target Start/End: Complemental strand, 35045962 - 35045821
Alignment:
Q  205 tctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagataccatt 303  Q
    |||||||||||||||||||||  | ||||||||||||||||||  || ||||| ||| || ||||| ||||||||||| || || |||||  ||||| ||    
T  35045962 tctaactattaaacgtttcaaaatggtcatttatctttgttttaatc-atcaatttgatcctattttattaattttaaactccttaaaaagaataccgtt 35045864  T
Q  304 agttaaagtaggttcatgagatctaacggtgcatcaccaacac 346  Q
     | ||||| || | |||  ||||||||| || |||||||||||    
T  35045863 ggataaaggagatccatcggatctaacgatgtatcaccaacac 35045821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1053409 - 1053453
Alignment:
Q  1 acacggatatcacactatccgcatccatgga-tatccatttacat 44  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  1053409 acacggatatcacactatctgcatccatggattatccatttacat 1053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2944398 - 2944442
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatc 45  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||    
T  2944398 acacggatatcacaccatccacatccatggatgtccatttacatc 2944442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11039516 - 11039564
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||| | |||| ||||||||||||||| |||||||||||||    
T  11039516 acacggatatcatattatctgcatccatggatatctatttacatcccta 11039564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 33070655 - 33070728
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaa 281  Q
    |||||||||||||||||||||| ||| ||||||||||||||  || ||||| ||| |||||||| |||||||||||    
T  33070655 taactattaaacgtttcaatttggtc-tttatctttgtttttgtc-atcaatttgatcatattttattaattttaa 33070728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4127799 - 4127750
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4127799 acacggatatcacactatccgcatccatggatatccatttacatccctag 4127750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12148831 - 12148783
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12148831 acacggatatcacactatccgcatccatggatatcgatttacatcccta 12148783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 13825701 - 13825659
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13825701 atatcacactatccgcatccatggatatccatttacatcccta 13825659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21287914 - 21287866
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  21287914 acacagatatcacactatctgcatccatggatatccatttacatcccta 21287866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25875036 - 25875084
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  25875036 acacggatatcacactatccacatccatgtatatccatttacatcccta 25875084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5295019 - 5294979
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccattta 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  5295019 acacggatatcacactatccgcatccatgaatatccattta 5294979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 48251980 - 48252024
Alignment:
Q  5 ggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  48251980 ggatatcacactatccacattcatggatatccatttacatcccta 48252024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 346
Target Start/End: Complemental strand, 27226598 - 27226466
Alignment:
Q  214 taaacgtttcaatttagtcatttatctttgttttcctcaatcaatt-ggtcatatttcattaattttaatctgctcaaaaaagataccattagttaaagt 312  Q
    ||||||||||||||| ||| ||||| ||||||||| ||| |||||| |||| ||||| ||||||||||| |  ||||||||  | | | || | |||||     
T  27226598 taaacgtttcaatttggtcctttatgtttgttttcatca-tcaatttggtcctattttattaattttaaacccctcaaaaagaagatcgttggataaagg 27226500  T
Q  313 aggttcatgagatctaacggtgcatcaccaacac 346  Q
    |||| ||| ||||||||| |||| ||||||||||    
T  27226499 aggtccataagatctaacagtgcgtcaccaacac 27226466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 346
Target Start/End: Complemental strand, 50003290 - 50003150
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagataccatta 304  Q
    ||||||||||||||||||||  | ||| ||||| ||||||||  || ||||| |||||| ||||| ||||||||||| || || |||||  | ||| ||     
T  50003290 ctaactattaaacgtttcaaaatggtcctttatgtttgttttaatc-atcaatttggtcctattttattaattttaaactccttaaaaataagaccgttg 50003192  T
Q  305 gttaaagtaggttcatgagatctaacggtgcatcaccaacac 346  Q
    | ||||| ||||  || ||||||||||||| |||||||||||    
T  50003191 gataaaggaggtcaatcagatctaacggtgtatcaccaacac 50003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 39530845 - 39530919
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaat 282  Q
    ||||||||||||||||||||||  || || |||||||||||| |||   | |||||||||||| ||||||||||||    
T  39530845 taactattaaacgtttcaatttgatcctt-atctttgttttcgtcatcgatttggtcatattttattaattttaat 39530919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 465
Target Start/End: Complemental strand, 50002608 - 50002561
Alignment:
Q  418 aattaggtgttggtgttacaccattagatcttatggatctcctttatc 465  Q
    ||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  50002608 aattatgtgttggtgatacaccgttagatctgatggatctcctttatc 50002561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25294253 - 25294302
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25294253 acacggatatcacactatccgcatccatggatatccatttacatccctag 25294302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48379419 - 48379467
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48379419 acacggatttcacactatccgcatccatggatatccatttacatcccta 48379467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 878 - 963
Target Start/End: Original strand, 32900333 - 32900418
Alignment:
Q  878 ttagaagtaacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaatgagaaatttggttattata 963  Q
    ||||||| ||| |||||||| ||||  |||| ||| ||||  |||||||||||||||||||||||||||||||||  |||||||||    
T  32900333 ttagaagaaacgaattcattaaaaaagtatgtaaagaattgtagttatgaaattatgaagaaacaatgagaaattaagttattata 32900418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2192115 - 2192163
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  2192115 acacggatatcacattatccgcatccatggacatccatttacatcccta 2192163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15378731 - 15378687
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatc 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  15378731 acacggatatcacactatccgcatccacggatatccatttacatc 15378687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19884735 - 19884783
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19884735 acacagatatcacactatccgcatccatgaatatccatttacatcccta 19884783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 17563117 - 17563160
Alignment:
Q  6 gatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  17563117 gatattacactatccgcatccatggatatccatttacatcccta 17563160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 43808587 - 43808514
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa 281  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||   | |||||||||||| |||||||||||    
T  43808587 taactattaaacgtttcaatttggtca-ttatctttgttttcgtcatcgatttggtcatattttattaattttaa 43808514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31585563 - 31585604
Alignment:
Q  5 ggatatcacactatccgcatccatggatatccatttacatcc 46  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  31585563 ggatattacactatccgcatccatggatatccatttacatcc 31585604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47140587 - 47140542
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcc 46  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  47140587 acacgaatatcacactatccgcatccatggatatctatttacatcc 47140542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 9822701 - 9822774
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa 281  Q
    |||||||||||||||||||||| |||  |||||||||||||| ||| | | |||||  ||||| |||||||||||    
T  9822701 taactattaaacgtttcaatttggtc-cttatctttgttttcgtcattgatttggttctattttattaattttaa 9822774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 29678653 - 29678695
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  29678653 atatcatactatctgcatcaatggatatccatttacatcccta 29678695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 38264656 - 38264698
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  38264656 atatcacagtatccgtatccatgaatatccatttacatcccta 38264698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21863 - 21815
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21863 acacggatatcacactatccgcatccatggatatccatttacatcccta 21815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8576549 - 8576501
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8576549 acacggatatcacactatccgcatccatggatatccatttacatcccta 8576501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 18230371 - 18230438
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcatt 273  Q
    ||||| ||||||||||| ||||| ||| ||||||||||||||||||||||| |||||| |||||||||    
T  18230371 ctaaccattaaacgttttaatttggtcctttatctttgttttcctcaatcatttggtcttatttcatt 18230438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32292710 - 32292761
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctaggt 52  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  32292710 acacggatatcatactatccgcatccatcgatatccatttacatccctaggt 32292761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 34435130 - 34435176
Alignment:
Q  3 acggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  34435130 acggatatcacactatccgcatccatgaatatccatttacatcccta 34435176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 363
Target Start/End: Original strand, 1948795 - 1948924
Alignment:
Q  234 tttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattagttaaagtaggttcatgagatctaacggt 333  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||| |||||| || |||||  | ||| || | ||||  || ||||| |||| ||||| |    
T  1948795 tttatttttgttttcctcaatcaattggtcctatgtcattaattctaatctactaaaaaagaagaccgttggataaaagagattcataagatgtaacgat 1948894  T
Q  334 gcatcaccaacaccaaattaagtttaattt 363  Q
    | |||||||||||  |||||| ||||||||    
T  1948895 gtatcaccaacacataattaattttaattt 1948924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 35168043 - 35168089
Alignment:
Q  3 acggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  35168043 acggatatcatactattcgcatccatggatatccatttacatcccta 35168089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 24317099 - 24317140
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttc 248  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  24317099 taactattaaacgtttcaatttggtcatttatctttgttttc 24317140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 28581943 - 28581898
Alignment:
Q  5 ggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  28581943 ggatatcacactatccacatccatggatatccatttacatctctag 28581898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10788369 - 10788326
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacat 44  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  10788369 acacggatatcacactatccgcatacatgaatatccatttacat 10788326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5999341 - 5999308
Alignment:
Q  1 acacggatatcacactatccgcatccatggatat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5999341 acacggatatcacactatccgcatccatggatat 5999308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 642390 - 642430
Alignment:
Q  5 ggatatcacactatccgcatccatggatatccatttacatc 45  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  642390 ggatattacactatccgcatccttggatatccatttacatc 642430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 1757560 - 1757421
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagataccattagt 306  Q
    |||||||||||||||||||||| |||  |||||||||||||| ||    | |||||| ||||| |||||||||||    ||||||||  | ||| || |     
T  1757560 taactattaaacgtttcaatttggtc-cttatctttgttttcgtcgtcgatttggtcctattttattaattttaaatccctcaaaaagaagaccgttgga 1757462  T
Q  307 taaagtaggttcatgagatctaacggtgcatcaccaacacc 347  Q
    ||||||| |||||| | ||||||| ||| ||||||||||||    
T  1757461 taaagtaagttcatcatatctaaccgtgtatcaccaacacc 1757421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7622163 - 7622115
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||| |||||||||||||| |||||  ||||||||||||||||||||||    
T  7622163 acacagatatcacactatctgcatctgtggatatccatttacatcccta 7622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 1692124 - 1692196
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaa 281  Q
    ||||||||||| |||||||||||||| ||||||||||||||| || ||||| |||||| ||||| |||||||||||    
T  1692124 taactattaaatgtttcaatttagtc-tttatctttgttttcgtc-atcaatttggtcctattt-attaattttaa 1692196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 465
Target Start/End: Original strand, 13562217 - 13562264
Alignment:
Q  418 aattaggtgttggtgttacaccattagatcttatggatctcctttatc 465  Q
    ||||||||||||||| |||||  |||||||| ||||||||||||||||    
T  13562217 aattaggtgttggtgatacactgttagatctgatggatctcctttatc 13562264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 359
Target Start/End: Original strand, 18230451 - 18230538
Alignment:
Q  272 ttaattttaatctgctcaaaaaagataccattagttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaattaagttta 359  Q
    |||||||||||| |||  ||||||| |||||| | ||||| ||||||||  ||| |||| ||| |||||||||||| |||||| ||||    
T  18230451 ttaattttaatccgcttgaaaaagagaccattggataaaggaggttcatatgatttaacagtgtatcaccaacacctaattaatttta 18230538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 352
Target Start/End: Original strand, 13561328 - 13561473
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagataccattag 305  Q
    |||||||||||||||||||  | ||| |||||||||||| |  || ||||| |||||| ||||| ||||||||||| || ||||||||  | | | || |    
T  13561328 taactattaaacgtttcaaaatggtcttttatctttgttatagtc-atcaatttggtcctattttattaattttaaactcctcaaaaagaagatcgttgg 13561426  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaatt 352  Q
     ||||| |||| ||| ||||||||  ||| |||||||||||| ||||    
T  13561427 ataaagaaggtccatcagatctaatagtgtatcaccaacacctaatt 13561473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 25437833 - 25437873
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttc 248  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  25437833 taactattaaacgtttcaatttggtc-tttatctttgttttc 25437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39800733 - 39800781
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39800733 acacggatatcacactatccgcatccatggatatccatttacatcccta 39800781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39207427 - 39207473
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39207427 acacggatatcacactatccgcatccatggatatccatttacatccc 39207473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 40056780 - 40056734
Alignment:
Q  3 acggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40056780 acggatatcacactatccgcatccatggatatccatttacatcccta 40056734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 33743048 - 33743089
Alignment:
Q  8 tatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33743048 tatcacactatccgcatccatggatatccatttacatcccta 33743089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35188925 - 35188969
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatc 45  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  35188925 acacgaatatcacactatccgcatccatggatatccatttacatc 35188969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 23429029 - 23428982
Alignment:
Q  5 ggatatcacactatccgcatccatggatatccatttacatccctaggt 52  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  23429029 ggatatcacactatccgcatccatgaatatctatttacatccctaggt 23428982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 42963283 - 42963240
Alignment:
Q  205 tctaactattaaacgtttcaatttagtcatttatctttgttttc 248  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  42963283 tctaactattaaacgtttcaatttggtcatttatctttgttttc 42963240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 353
Target Start/End: Original strand, 42962072 - 42962219
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagataccatta 304  Q
    |||||||||||||| || || || ||| ||||||||||||||| || ||||| |||||| ||||| ||||||||||| |  ||||||||  | ||| ||     
T  42962072 ctaactattaaacgctttaaattggtcctttatctttgttttcatc-atcaatttggtcctattttattaattttaaacctctcaaaaagaagaccgttg 42962170  T
Q  305 gttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaatta 353  Q
    | ||||| ||||  || |||||||| |||| |||||||||||| |||||    
T  42962171 gataaaggaggtctataagatctaatggtgtatcaccaacacctaatta 42962219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 42962219 - 42962171
Alignment:
Q  417 taattaggtgttggtgttacaccattagatcttatggatctcctttatc 465  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||||    
T  42962219 taattaggtgttggtgatacaccattagatcttatagacctcctttatc 42962171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 39135714 - 39135641
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaatt-ggtcatatttcattaattttaa 281  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||| |||||| |||| ||||| |||||||||||    
T  39135714 taactattaaatgtttcaatttggtcatt-atctttgttttcctca-tcaatttggtcctattttattaattttaa 39135641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 876 - 965
Target Start/End: Original strand, 6329123 - 6329212
Alignment:
Q  876 ttttagaagtaacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaacaatgagaaatttggttattataca 965  Q
    ||||||| | |||||||||| | |||| ||||||||| |||||  ||||||||||||| |||||| | ||||| |||  |||||||||||    
T  6329123 ttttagatgaaacaaattcactaaaaaattatgaaaagaattaccgttatgaaattataaagaaagattgagatattaagttattataca 6329212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 11907227 - 11907154
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaatt-ggtcatatttcattaattttaa 281  Q
    ||||||||||| |||||||||| ||| || |||||||||||| ||| |||||| |||||||||| |||||||||||    
T  11907227 taactattaaatgtttcaatttggtcctt-atctttgttttcgtca-tcaatttggtcatattttattaattttaa 11907154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 4904254 - 4904326
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa 281  Q
    |||||||||||||||||||||| ||| || |||||||||||| |||   | |||||||||||| |||||||||||    
T  4904254 taactattaaacgtttcaattt-gtcctt-atctttgttttcatcatcgatttggtcatattttattaattttaa 4904326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 39050738 - 39050824
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaa 293  Q
    |||||||||||||||||||  | ||| ||||||||| ||||  |||   | |||||||||||| ||||||||||| || ||||||||    
T  39050738 taactattaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcatattttattaattttaaactcctcaaaaa 39050824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 346
Target Start/End: Original strand, 8358217 - 8358357
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatca-attggtcatatttcattaattttaatctgctcaaaaaagataccatta 304  Q
    |||| |||||||||||| ||  | ||| ||||||||||||||  || ||||  |||||||||||| |||||||||||  | || |||||  | ||| ||     
T  8358217 ctaattattaaacgttttaaaatggtcttttatctttgttttagtc-atcattttggtcatattttattaattttaaattccttaaaaagaagaccgttc 8358315  T
Q  305 gttaaagtaggttcatgagatctaacggtgcatcaccaacac 346  Q
    ||||||| |||| ||| | ||||||||||| |||||||||||    
T  8358316 gttaaaggaggtccatcaaatctaacggtgtatcaccaacac 8358357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 38603816 - 38603676
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaatt-ggtcatatttcattaattttaatctgctcaaaaaagataccattag 305  Q
    |||||||||||| ||||||  | ||| ||||||||||||||  ||| |||||| |||| ||||| ||||||||||| || || |||||  | ||| || |    
T  38603816 taactattaaacttttcaaaatggtcctttatctttgttttagtca-tcaatttggtcctattttattaattttaaactcctaaaaaagaagaccgttgg 38603718  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacacc 347  Q
     ||||| |||| ||| ||||||||  ||| ||||||||||||    
T  38603717 ataaagaaggtccatcagatctaatagtgtatcaccaacacc 38603676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42836781 - 42836748
Alignment:
Q  1 acacggatatcacactatccgcatccatggatat 34  Q
    |||| |||||||||||||||||||||||||||||    
T  42836781 acacagatatcacactatccgcatccatggatat 42836748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8227557 - 8227606
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8227557 acacggatatcacactatccacatccatggatatccatttacatccctag 8227606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36583218 - 36583267
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  36583218 acacggatatcatactatacgcatccatggatatccatttacatccctag 36583267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31005815 - 31005767
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31005815 acacggatatcacactatctgcatccatggatatacatttacatcccta 31005767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 9766107 - 9766146
Alignment:
Q  11 cacactatccgcatccatggatatccatttacatccctag 50  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  9766107 cacactatccgcatccatgaatatccatttacatccctag 9766146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 11481226 - 11481187
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcc 46  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  11481226 atatcacactatccgcatctatggatatccatttacatcc 11481187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6870816 - 6870865
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccctag 50  Q
    |||||||||| ||| |||||||||||||||||||  ||||||||||||||    
T  6870816 acacggatattacattatccgcatccatggatatatatttacatccctag 6870865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 23767927 - 23768066
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaatctgctcaaaaaagat-accattag 305  Q
    |||||| |||||||||||||||||||  |||||||||||||| |||   | |||||||||||| |||||||| ||  | |  ||||||||| | ||||||    
T  23767927 taactaataaacgtttcaatttagtc-cttatctttgttttcgtcatcgatttggtcatattttattaatttgaa-atccataaaaaagatgatcattag 23768024  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacacc 347  Q
     ||||| | |||||| | ||||||| ||| ||||||||||||    
T  23768025 ataaaggaagttcatcatatctaaccgtgtatcaccaacacc 23768066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7987555 - 7987598
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacat 44  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||    
T  7987555 acacagatatcacaatatctgcatccatggatatccatttacat 7987598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 12820164 - 12820020
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa-tctgctcaaaaaagataccattag 305  Q
    |||||||||||||||| ||||| ||| || |||||||||||| ||    | |||||| ||||| ||||||||||| ||| ||||||||  | ||| || |    
T  12820164 taactattaaacgttttaatttggtcctt-atctttgttttcgtcgtcgatttggtcctattttattaattttaaatct-ctcaaaaagaagaccgttgg 12820067  T
Q  306 ttaaagtaggttcatgagatctaacggtgcatcaccaacaccaaatt 352  Q
     ||||| |||||||| | ||||||| ||| |||||||||||| ||||    
T  12820066 ataaaggaggttcatcatatctaactgtgtatcaccaacacctaatt 12820020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7716 - 7668
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7716 acacggatatcacactatccgcatccatggatatcgatttacatcccta 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42625343 - 42625391
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42625343 acacggatatcacactctccgcatccatggatatccatttacatcccta 42625391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13807371 - 13807323
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  13807371 acacagatatcacactatccgcgtccatggatatccatttacatcccta 13807323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45151551 - 45151595
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  45151551 acacggatatcacactatccgcatgcatggatatccatttacatc 45151595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 372034 - 371893
Alignment:
Q  206 ctaactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaa-ttggtcatatttcattaattttaatctgctcaaaaaagat-accatt 303  Q
    |||||||||||||||||||||||  || ||||||||||||||| || ||||| ||| || ||||| ||||||||||| |  ||| |||||||| ||  ||    
T  372034 ctaactattaaacgtttcaatttgatcctttatctttgttttcatc-atcaatttgatcctattttattaattttaaacctctc-aaaaagatgactgtt 371937  T
Q  304 agttaaagtaggttcatgagatctaacggtgcatcaccaacacc 347  Q
     | ||||| |||||||| ||||||||||||| ||||| ||||||    
T  371936 ggataaaggaggttcatcagatctaacggtgtatcactaacacc 371893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5938534 - 5938489
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatcc 46  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  5938534 acacggatatcacactattcacatccatggatatccatttacatcc 5938489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13626626 - 13626665
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccattt 40  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  13626626 acacgaatatcacactatccgcatctatggatatccattt 13626665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42604264 - 42604217
Alignment:
Q  1 acacggatatcacactatccgcatccatggatatccatttacatccct 48  Q
    |||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  42604264 acacggatatcatactatccacacacatggatatccatttacatccct 42604217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 5110000 - 5109959
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatcccta 49  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  5110000 atatcacactatccgcatc-atggatatctatttacatcccta 5109959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 33553431 - 33553358
Alignment:
Q  207 taactattaaacgtttcaatttagtcatttatctttgttttcctcaatcaattggtcatatttcattaattttaa 281  Q
    |||||||||||||||||||||| |||  |||||||||||||| |||   | |||||| ||||| |||||||||||    
T  33553431 taactattaaacgtttcaatttggtc-cttatctttgttttcgtcatcgatttggtcctattttattaattttaa 33553358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 66390 - 66350
Alignment:
Q  7 atatcacactatccgcatccatggatatccatttacatccc 47  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  66390 atatcacactatccgcatccatggacatccatttacatccc 66350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 7210 - 7253
Alignment:
Q  6 gatatcacactatccgcatccatggatatccatttacatcccta 49  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  7210 gatatcacactatctgcatccatggatatccatttacataccta 7253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University