View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_11 (Length: 353)
Name: NF10204_11
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_11 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 9194792 - 9195107
Alignment:
| Q |
9 |
agcagagagacaaaggagagataaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatct |
108 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9194792 |
agcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatct |
9194891 |
T |
|
| Q |
109 |
gatgcagtagattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaagggatcgaaaaaggcaatgatgaaaacgatgaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
9194892 |
gatgcagtagattacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaaggaatcgaaaaaggcgatgatgaaaacgatgaaaa |
9194991 |
T |
|
| Q |
209 |
ttgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaacaaacctagttgtagtaagaatcttattgctttagagattgatgtgaagat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9194992 |
ttgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaacaaacctagttgtagtaagaatcttattgctttagagattgatgtgaagat |
9195091 |
T |
|
| Q |
309 |
cataggacatgatgct |
324 |
Q |
| |
|
|||||||||||||||| |
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| T |
9195092 |
cataggacatgatgct |
9195107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 9213238 - 9212990
Alignment:
| Q |
9 |
agcagagagacaaaggagagataaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatct |
108 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
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| T |
9213238 |
agcagagagacaaaggagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatca |
9213139 |
T |
|
| Q |
109 |
gatgcagtagattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaagggatcgaaaaaggcaatgatgaaaacgatgaaaa |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||| ||||||||||| | |||| |||||||| ||| |
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| T |
9213138 |
gatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaa |
9213039 |
T |
|
| Q |
209 |
ttgtcgataataatagtgcaacgacaacttcaattgtggtagaccaaaa |
257 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
9213038 |
ttgtcgataataacagtgcaacgacaacttcaactgtggtagaccaaaa |
9212990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 28081131 - 28081217
Alignment:
| Q |
9 |
agcagagagacaaaggagagataaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagc |
95 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| | |||||||||| || | ||||||||||||| ||||| |||||||| ||||| |
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|
| T |
28081131 |
agcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagatggacaaagc |
28081217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 17370997 - 17371053
Alignment:
| Q |
118 |
gattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaag |
174 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||| |
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|
| T |
17370997 |
gattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 24748746 - 24748802
Alignment:
| Q |
118 |
gattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaag |
174 |
Q |
| |
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||||||||| ||||||| ||||||||||||||| ||||| ||| || |||||||||| |
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| T |
24748746 |
gattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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