View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10204_12 (Length: 343)
Name: NF10204_12
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 41593481 - 41593821
Alignment:
| Q |
3 |
aatattgatttaatgggccttttaaaaattgtgaacatcatttaagctagtaatgtccagataaagagagaaatttaagagattaaccagttacaagcta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41593481 |
aatattgatttaatgggccttttaaaaattgtgaacatcatttaagctagtaatgtccagataaagagagaaatttaagagattaaccagttacaagcta |
41593580 |
T |
|
| Q |
103 |
ccctaatttaaaaacattcaggatctcttgaccaaatataagttacattattcttcagaccagaacaaggcagaaaaaccctgtattaaagattgaaaaa |
202 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41593581 |
ccctaatttaaaaacattcaggaccccttgaccaaatataagttacattaatcttcagaccagaacaaggcagaaaaaccctgtattaaagattgacaaa |
41593680 |
T |
|
| Q |
203 |
gcttttggttgattatgaatctagctctaattcaccatggatttgaagatgtaaggaatttgttgtacctttaggttcctccctttgtgaaaatattgaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41593681 |
gcttttggttgattatgaatctagctctaattcaccatggatttgaagatgtaaggaatttgttgtacctttaggttcctccctttgtgaaaatattgaa |
41593780 |
T |
|
| Q |
303 |
aatgacccaaagatgtcagatagcttctccaaagttgattc |
343 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41593781 |
aatgacccaaatatgtcagatagcttctccaaagttgattc |
41593821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University