View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_14 (Length: 339)
Name: NF10204_14
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 191 - 339
Target Start/End: Complemental strand, 29322040 - 29321892
Alignment:
| Q |
191 |
tctaaactattctagtggagacatgtttactcttttaaggtggcatgtaggatgagggttaaattacatccttcattagtcgaatgcataaatcatacat |
290 |
Q |
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| T |
29322040 |
tctaaactattatagtggagacatgtttactcttttaaggtggcatgtagggtgagggttaaattacatccttcatcaatggaatgcataaatcatacat |
29321941 |
T |
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| Q |
291 |
gtagaattaatcaatagcctagatttgttagaaataaattgtaccatct |
339 |
Q |
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| T |
29321940 |
gtagaattagtcaatagcctagatttgttagaaataaattgtaccatct |
29321892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 29328380 - 29328272
Alignment:
| Q |
18 |
ctaacaacttcaacatattcaaatcacgtatatttcaaactaatctttcatataaaaatttacacaactccttcttctgcaaccatgggaaaggatctac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||| |
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| T |
29328380 |
ctaacaacttcaacatattcaaatcacgtatatttcaaactaatctttcatataaaaatttacacgacttcgtcttccgcaaccatgggaaaggatctac |
29328281 |
T |
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| Q |
118 |
ctctttatg |
126 |
Q |
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| T |
29328280 |
ctctttatg |
29328272 |
T |
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