View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_16 (Length: 321)
Name: NF10204_16
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 32941845 - 32941537
Alignment:
| Q |
13 |
atactctctcatacattaaccatttaattaccacttttgcttatagttcgttctcaaaaaccaaataatattttaatcaatacttataataattgtaaag |
112 |
Q |
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| T |
32941845 |
atactctctcatacattaaccatttaattaccacttttgcttatagttcgttctcaaaaaccaaataatattttaatcaatacttataataattgtaaag |
32941746 |
T |
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| Q |
113 |
attaatttgtctatttactcacaaatatattatcagaaaaatagaatatcaacaactcttttagttcagtgtatgtcatacccataaataagaaccttct |
212 |
Q |
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| T |
32941745 |
attaatttgtctatttactcacaaatatattatcagaaaaatagaatataaacaacacttttagttcagtgtatgtcatacccataaataagaaccttct |
32941646 |
T |
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| Q |
213 |
tgtgtaccatcaataattcctactgcatcagattgtacgttaaacgtgcttctctttttgagcaaactcgacacctaagatatgtaaatgaaagctgtaa |
312 |
Q |
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| T |
32941645 |
tgtgtaccatcaataattcctactgcatctgattgtacgttaaacgtgcttctctttttgagcaaactcgacacctaagatatggaaatgaaagctgtaa |
32941546 |
T |
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| Q |
313 |
acatttaag |
321 |
Q |
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| T |
32941545 |
acatttaag |
32941537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 11823707 - 11823665
Alignment:
| Q |
187 |
gtcatacccataaataagaaccttcttgtgtaccatcaataat |
229 |
Q |
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| T |
11823707 |
gtcatacccatagataagaaccttcttgggttccatcaataat |
11823665 |
T |
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