View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10204_17 (Length: 318)

Name: NF10204_17
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10204_17
NF10204_17
[»] chr3 (1 HSPs)
chr3 (30-318)||(39280712-39281000)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 39281000 - 39280712
Alignment:
Q  30 aaaggagtttcttatcttaccaatagtgatctgttaagagaaactgattctttgttggccttgatggaaggaattgggaaaaaacctaatactccaatga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39281000 aaaggagtttcttatcttaccaatagtgatctgttaagagaaactgattctttgttggccttgatggaaggaattgggaaaaaacctaatactccaatga 39280901  T
Q  130 gcgaacagaacaaggtggttgttgagataatggatttggtggaagatgatggggttatggtgatgaatgaagttttggttagaattaaagaatttgggga 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  39280900 gtgaacagaacaaggtggttgttgagataatggatttggtggaagatgatggggttatggtgatgaatgaagttttggttagagttaatgaatttgggga 39280801  T
Q  230 gagggagaaactgggctgtcttggttttggagaagtggtggaattggtttgtgttttgaagagattggaaatgtgcagagagagaataa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39280800 gagggagaaactgggctgtcttggttttggagaagtggtggaattggtttgtgttttgaagagattggaaatgtgcagagagagaataa 39280712  T

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