View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_4 (Length: 632)
Name: NF10204_4
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_4 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 21 - 617
Target Start/End: Original strand, 39659824 - 39660422
Alignment:
| Q |
21 |
atatcaactagaatggatccagagcagttgaaaataatggggaatgaggattataagaatggaagattcgcggaggcgttatccttgtatgatgcagcta |
120 |
Q |
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| T |
39659824 |
atatcaactagaatggatccagagcagttgaaaataatggggaatgaggattataagaatggaagattcgcggaggcgttatccttgtatgatgcagcta |
39659923 |
T |
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| Q |
121 |
ttgcaattgatcccaagacggcttcttatagaagtaatagaagcgctgctttaactgctcttggtaggcttcttgaagctgtgtttgaatgtagggaagc |
220 |
Q |
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| T |
39659924 |
ttgcaattgatcccaagacggcttcttatagaagtaatagaagcgctgctttaactgctcttggtaggcttcttgaagctgtgtttgaatgtagggaagc |
39660023 |
T |
|
| Q |
221 |
tattcaaattgatcctcactatcatagagctcatcatcgtttaggaaatttgcactttaggtaggtatacatacaattatgcaatattaattcaacattt |
320 |
Q |
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| T |
39660024 |
tattcaaattgatcctcattatcatagagctcaccatcgtttaggaaatttgcactttaggtaggtatacatacaattatgcaatattaattcaacattt |
39660123 |
T |
|
| Q |
321 |
ttatttgaccttgttaccagatacacatgactttttgcttatatttaagaacggagcggagagagtgactgatgatgtcc--atctcattgctccttact |
418 |
Q |
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| T |
39660124 |
ttatttgaccttgttaccagatacacatgactttttgcttatatttaagaatggagcggagagagtgactaataatgtgcgtttattattgctgattaca |
39660223 |
T |
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| Q |
419 |
gattaggagaaacagataaggccctttatcattataaacaagcaggaccagaggctgatcctgatgaggtttctaaagtgaagattcttcaagctcattt |
518 |
Q |
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| T |
39660224 |
gattaggagaaacagataaggccctttatcattataaacaagcaggacccgaggctgatcctgatgaggttgctaaagtgaagattcttcaagctcattt |
39660323 |
T |
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| Q |
519 |
aagtaagtgcactgaggctcgcaggttaggagattggaacacactaattactgagacctccaaaattctatcatccggtgcagattctgctccacaggt |
617 |
Q |
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| T |
39660324 |
aagtaagtgcactgaggctcgcaggttaggagattggaacacactaattactgagacctccaaaattctatcatccggtgcagattctgctccacaggt |
39660422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 4285955 - 4285860
Alignment:
| Q |
281 |
gtaggtatacatacaattatgcaatattaattcaacatttttatttgaccttgttaccagatacacatgactttttgcttatatttaagaacggag |
376 |
Q |
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| T |
4285955 |
gtaggtatgcatacaattatgcaatattaattcaacatttttatttgatcttgttaccgaatacacgtaactttttgcttatatttaagaatggag |
4285860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 523
Target Start/End: Complemental strand, 4285809 - 4285767
Alignment:
| Q |
481 |
gatgaggtttctaaagtgaagattcttcaagctcatttaagta |
523 |
Q |
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| T |
4285809 |
gatgaggttgctaaagtgaagattcttcaagctcgtttaagta |
4285767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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