View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10204_7 (Length: 480)
Name: NF10204_7
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Complemental strand, 46906158 - 46905702
Alignment:
| Q |
13 |
aatatatttatttagaactttaaaaagtaatttagatatcacgacccaattgaagttagataacgaatgcaatcataattagtcaatatatatacccgct |
112 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46906158 |
aatatatttatttagaattttaaaaagtaatttagatatcacgacccaattgaagttagataacgaatgcaatcaaaattagtcaatatatatacccgct |
46906059 |
T |
|
| Q |
113 |
ccaatcccaaatattagtaaaaattagtcaaccaatgttgatgtattttgtctaaattatagatcaaatatannnnnnnnnnaggatatttggtccaaaa |
212 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
46906058 |
ccaatcccaaatatcagt------tagtcaaccaatgttgatgtattttgtctaaattatagatctaatat-tttttttttgaggatatttggtccaaaa |
46905966 |
T |
|
| Q |
213 |
tttagacaaaataaatacatacatacactcactgtatgtgtgattgcagggaatacagtttatgtccgcagactgccaatatagtttgtgtaccggtgta |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905965 |
tttagacaaaataaatacataca----ctcaccgtatgtgtgattgcagggaatacagtttatgtccgcagactgccaatatagtttgtgtaccggtgta |
46905870 |
T |
|
| Q |
313 |
cgtgaaaaacaaatgcaaccatccaacgtttaacaaatttttcgtttgtaattaagagctaatcaattaaaatacatttatgttttttctctttcgaaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905869 |
cgtgaaaaacaaatgcaaccatccaacgtttaacaaatttttcgtttgtaattaagagctaatcaattaaaatacatttatgttttttctctttcgaaaa |
46905770 |
T |
|
| Q |
413 |
agtctttataagctactaatttgcaaacatatggagatgttttttgaagaaggtagtcatgtcatatg |
480 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905769 |
agtctttataagctactaatttgcaaacttatggagatgttttttgaagaaggtagtcatgtcatatg |
46905702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University