View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_8 (Length: 405)
Name: NF10204_8
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_8 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 23 - 395
Target Start/End: Original strand, 40254251 - 40254623
Alignment:
| Q |
23 |
cacttattctgtcaaattctaattatgaaatgtccaaataatgtgtctctacaatataggtccaaaaatagaccaaaatcaattaacaattagagaagtg |
122 |
Q |
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| T |
40254251 |
cacttattctgtcaaattctaattatgaaatgtccaaataatgtgtctctacaatataggtccaaaaatagaccaaaatcaattaacaattagagaagtg |
40254350 |
T |
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| Q |
123 |
gatattaatgatagaatggaaaacaacatccctataaactagcagaggttaacagactaaaccacttctgaattggaatataaaaacaatgtcacattta |
222 |
Q |
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| T |
40254351 |
gatattaatgatagaatggaaaacaacatccctataaactaggagaggttaacagactaaaccacttctgaattggaatataaaaacaatgtcacattta |
40254450 |
T |
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| Q |
223 |
ttttcaaaatcttatatgttattcacttttgttttgtaagtaatttacctaatattagcagcatacctgaatagctagctaaatatgatttcttccaaaa |
322 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40254451 |
ttttcaaaatcttatatgttattcacttttgtcttgtaagtaatttacctaatattagcagcatacctgaatagctagctaaatatgatttcttccaaaa |
40254550 |
T |
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| Q |
323 |
atgaggtcagtgattcttcatttcttgtattgattttctccctaaacggattatattgtctcttttatctgtg |
395 |
Q |
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| T |
40254551 |
atgaggtaagtgattcttcatttcttgtattgattttctccctaaacggattatattgtctcttttatttgtg |
40254623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 26281553 - 26281601
Alignment:
| Q |
87 |
aaaatagaccaaaatcaattaacaattagagaagtggatattaatgata |
135 |
Q |
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|||||||||||||| ||||||||| |||||||| | | ||||||||||| |
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| T |
26281553 |
aaaatagaccaaaagcaattaacagttagagaaatagctattaatgata |
26281601 |
T |
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