View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_low_1 (Length: 330)
Name: NF10204_low_1
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 25091096 - 25090783
Alignment:
| Q |
1 |
agcaaacatgcaaccagcaatagtataattcgaaatccttccgccgccatgacaacccttagtttgaattcaacacctctcttcccaacaaagaaatgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25091096 |
agcaaacatgcaaccagcaatagtataattcgaaatccttccgccgccatgacaacccttagtttgaattctacacctctcttcccaacaaagaaatgct |
25090997 |
T |
|
| Q |
101 |
gctatagagcttcttctttcttagctagttactctcttgaatatgcaatgcaagattgagcaagaaaaaacaaccttataaagaggaactattctgctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25090996 |
gctatagagcttcttctttcttagctagttactctcttgaatatgcaatgcaagattgagcaagaaaaaacaaccttataaagaggaactattctgctgt |
25090897 |
T |
|
| Q |
201 |
aatgtcccttttaggatttggttgtatagcaatataggaatacttaatacgtatatgaagtgcaaataactcaattaattaaagacacataacataaaac |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25090896 |
aatgtctcttttaggatttggttgtatagcaatataggaatacttaatacgtatatgaagtgcaaataactcaattaattaaagacacataacataaaac |
25090797 |
T |
|
| Q |
301 |
atgtgtcaaggatg |
314 |
Q |
| |
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|||||||||||||| |
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| T |
25090796 |
atgtgtcaaggatg |
25090783 |
T |
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