View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10204_low_4 (Length: 249)
Name: NF10204_low_4
Description: NF10204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10204_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 52712249 - 52712030
Alignment:
| Q |
19 |
caaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttttgtcat |
118 |
Q |
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| T |
52712249 |
caaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctccaaaccatgaagaggatgagttttgtcat |
52712150 |
T |
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| Q |
119 |
cacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttcttcctca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712149 |
cacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttcttcctca |
52712050 |
T |
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| Q |
219 |
atttcaaactctctttctct |
238 |
Q |
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|||||||| ||||||||||| |
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| T |
52712049 |
atttcaaagtctctttctct |
52712030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 52717845 - 52717627
Alignment:
| Q |
20 |
aaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttttgtcatc |
119 |
Q |
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|||||||| |||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||| ||| ||||||| |
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| T |
52717845 |
aaatgatacaagagaccaaacaagtcctataagacttgagtaggtattaggatttctgatgagttttctccaaaccatgatgaggattagtcttgtcatg |
52717746 |
T |
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| Q |
120 |
acacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttcttcctcaa |
219 |
Q |
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||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |
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| T |
52717745 |
acacttgctggtggcatctgtgtatttttgcttacatcccctcctccttccaagtccatcttcttctggctaatatatggagactttactgcttcctcaa |
52717646 |
T |
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| Q |
220 |
tttcaaactctctttctct |
238 |
Q |
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|||||| || |||||||| |
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| T |
52717645 |
tttcaacatccctttctct |
52717627 |
T |
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