View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10205_low_1 (Length: 671)
Name: NF10205_low_1
Description: NF10205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10205_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 657
Target Start/End: Original strand, 28249673 - 28250309
Alignment:
| Q |
19 |
ccattacgctgcatactttctctctttcgatttcatctagctttggatgaacctgnnnnnnnntaatatacaaactcgttaaaaggtgtcgtttttcatc |
118 |
Q |
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| T |
28249673 |
ccattacgctgcatactttctctctttcgatttcatctagctttggatgaacctgaaaaaaa--aatatacaaactcgttaaacggtgtcgtttttcatc |
28249770 |
T |
|
| Q |
119 |
aactaaattcatattcaaatttgttaatgtgtttttgtttttaccttgagatagatatcaacggcgcggtaaagatcatcgtcgattttacgcgcgtgtt |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28249771 |
aactaaattcaaattcaaatttgttaatgtgtttttgtttttaccttgagatagatatcaacggcgcggtaaagatcatcgtcgattttacgcgcgtgtt |
28249870 |
T |
|
| Q |
219 |
taggaataagaacagcgattccgttgaattttgagatgctgagttcaccgtacgcggcgatttcagcgaggtacatatcgacggttttcgccacacgcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28249871 |
taggaataagaacagcgattccgttgaattttgagatgctgagttcaccgtacgcggcgatttcagcgaggtacatgtcgacggttttcgccacacgcag |
28249970 |
T |
|
| Q |
319 |
catagggacggagaatgattgtttgagttctcccggtgtgaaaaccgctgtgnnnnnnnnnnnnncaacgaagactgagatgattctgcgaacgctttct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28249971 |
catagggacggagaatgattgtttgagttctcccggtgtgaaaaccgctgtgtttttttctttttcaacgaagactgagatgattctgcgaacgctttct |
28250070 |
T |
|
| Q |
419 |
agatcaaagagtttctcgccgtcgtaggagaatgacatcacgaggaggtcgtcgacggtaacgtgttcgaggattgccgagattcgtttctcgagttcgg |
518 |
Q |
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| T |
28250071 |
agatcaaagagtttctcgccgtcgtaggagaatgacatcacgaggaggtcgtcgacggtaacgtgttcgaggattgccgagattcgtttctcgagttcgg |
28250170 |
T |
|
| Q |
519 |
ttttgcagacggtggaggcgcggaggtggatggcgcaacggaggaggcagcaaaggaagttgattggaaaagctgctttctctgaagggaagagattgat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28250171 |
ttttgcagacggtggaggcgcggaggtggatggcgcaacggaggaggcagcaaaggaagttgattggaaaagctgctttctccgaagggaagagattgat |
28250270 |
T |
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| Q |
619 |
aattaactgtagaaggcttcgttgttttgatctgatgtc |
657 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
28250271 |
aattaactctagaaggcttcgttgttttgatctgatgtc |
28250309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 613
Target Start/End: Original strand, 32179628 - 32179846
Alignment:
| Q |
395 |
gagatgattctgcgaacgctttctagatcaaagagtttctcgccgtcgtaggagaatgacatcacgaggaggtcgtcgacggtaacgtgttcgaggattg |
494 |
Q |
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||||||||||| |||| ||| || ||||| | || ||||||||||||||| |||||||| || | ||| |||| || || |||||||| || ||| |
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| T |
32179628 |
gagatgattctccgaatgctatcaagatccagaagcctctcgccgtcgtaggtgaatgacagaaccaagagatcgttcactgttacgtgttccagaattt |
32179727 |
T |
|
| Q |
495 |
ccgagattcgtttctcgagttcggttttgcagacggtggaggcgcggaggtggatggcgcaacggaggaggcagcaaaggaagttgattggaaaagctgc |
594 |
Q |
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| | ||||| |||||||||||| ||||| || | |||||||| |||| ||| || |||||||| || ||||| ||||||||||| |||||||| || |
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| T |
32179728 |
cagctattcgcttctcgagttcgcgcttgcacgcgcttgaggcgcgtaggtagatagcacaacggagaagacagcagaggaagttgatcggaaaagcagc |
32179827 |
T |
|
| Q |
595 |
tttctctgaagggaagaga |
613 |
Q |
| |
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|||||| || || |||||| |
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| T |
32179828 |
tttctccgacggaaagaga |
32179846 |
T |
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