View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10205_low_11 (Length: 244)

Name: NF10205_low_11
Description: NF10205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10205_low_11
NF10205_low_11
[»] chr5 (4 HSPs)
chr5 (1-233)||(42435316-42435540)
chr5 (185-230)||(11417025-11417070)
chr5 (185-233)||(9498699-9498747)
chr5 (193-233)||(13786046-13786086)
[»] chr4 (4 HSPs)
chr4 (1-152)||(28293411-28293563)
chr4 (192-242)||(41444640-41444690)
chr4 (185-233)||(25483401-25483449)
chr4 (185-233)||(36608704-36608752)
[»] chr2 (4 HSPs)
chr2 (185-233)||(5543043-5543091)
chr2 (185-230)||(3594226-3594271)
chr2 (185-233)||(6421796-6421844)
chr2 (185-225)||(33731713-33731753)
[»] chr8 (3 HSPs)
chr8 (200-233)||(5274855-5274888)
chr8 (185-234)||(43274823-43274872)
chr8 (185-230)||(45121704-45121749)
[»] chr6 (2 HSPs)
chr6 (185-229)||(1950234-1950278)
chr6 (185-233)||(3058291-3058339)
[»] chr3 (3 HSPs)
chr3 (185-233)||(39935000-39935048)
chr3 (185-233)||(42584867-42584915)
chr3 (188-232)||(46546371-46546415)
[»] chr1 (2 HSPs)
chr1 (190-233)||(14318937-14318980)
chr1 (187-233)||(41759550-41759596)
[»] chr7 (3 HSPs)
chr7 (191-233)||(45433312-45433354)
chr7 (185-233)||(23422-23470)
chr7 (185-233)||(37533409-37533457)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42435316 - 42435540
Alignment:
Q  1 aaaatatttcttgatttgaataaatttttgaaatactcgtatttatatttctggaagtcttgtataaaacatttcaggattttgttacagatttcaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  42435316 aaaatatttcttgatttgaataaatttttgaaatactcgtatttatatttctggaagtcttgtataaaacatttcaggatttt-ttacaaatttcaaaaa 42435414  T
Q  101 acaccttgaaatcttaacatttgtaagca-gggctaataacactagtggaaaatgttgatttgcaacttgcaagtgtgaaataacaggatccataaatct 199  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||       ||||||||||||| ||| ||||||||| |||||    
T  42435415 acaccttgaaatcttaacatttgtaagtaggggccaataacactagtggaaaatgttgat-------ttgcaagtgtgaagtaagaggatccat-aatct 42435506  T
Q  200 attgccttaagattttgagtaagagtgtgatgtc 233  Q
    ||| ||||||| |||||| | |||||||||||||    
T  42435507 attaccttaaggttttgaatcagagtgtgatgtc 42435540  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 11417070 - 11417025
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgat 230  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||    
T  11417070 aggatccataaacccattgccttaaggttttgtgtaagagtgtgat 11417025  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 9498747 - 9498699
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||| ||||||| | ||||||||||||||||| ||||||||||| ||||    
T  9498747 aggacccataaacccattgccttaagattttgggtaagagtgtggtgtc 9498699  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 13786086 - 13786046
Alignment:
Q  193 taaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    ||||||||||| ||||||||||||  |||||||||||||||    
T  13786086 taaatctattgtcttaagattttggataagagtgtgatgtc 13786046  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 28293563 - 28293411
Alignment:
Q  1 aaaatatttcttgatttgaataaatttttgaaatactcgtatttatatttctggaagtcttgtataaaacatttcaggattttgttacagatttcaaaaa 100  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||| |  ||||||||| |||||||||||| ||||| ||||||||||    
T  28293563 aaaatgtttctcgatttgaataaattttttaaatactcgtatttatatttatgaaagacccgtataaaacgtttcaggatttttttacaaatttcaaaaa 28293464  T
Q  101 acaccttgaaatcttaacatttgtaagca-gggctaataacactagtggaaaa 152  Q
    ||||   |||||| ||||||||||||||| |||| ||||||||||||||||||    
T  28293463 acacaacgaaatcctaacatttgtaagcaggggccaataacactagtggaaaa 28293411  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 41444640 - 41444690
Alignment:
Q  192 ataaatctattgccttaagattttgagtaagagtgtgatgtccatctcatt 242  Q
    |||||||||||| ||||||||||||||| |  |||||||||||| ||||||    
T  41444640 ataaatctattgtcttaagattttgagttaaggtgtgatgtccaactcatt 41444690  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 25483401 - 25483449
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||| ||||    
T  25483401 aggatccataaacccattgccttaaggttttgggtaagagtgtggtgtc 25483449  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 36608752 - 36608704
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||||| |||| |||||| ||||| ||||||||||| ||||    
T  36608752 aggatccataaatccattgtcttaaggttttgggtaagagtgtggtgtc 36608704  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 5543091 - 5543043
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  5543091 aggatccataaacctattgccttaagattttgggtaagagtgtggtgtc 5543043  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 3594271 - 3594226
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgat 230  Q
    ||||||||||||   ||||| |||||||||||||||||||||||||    
T  3594271 aggatccataaacacattgctttaagattttgagtaagagtgtgat 3594226  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 6421796 - 6421844
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||| ||||    
T  6421796 aggacccataaacctattgccttaaggttttgggtaagagtgtggtgtc 6421844  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 33731713 - 33731753
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagt 225  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  33731713 aggatccataaacctattgccttaaggttttgggtaagagt 33731753  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 5274855 - 5274888
Alignment:
Q  200 attgccttaagattttgagtaagagtgtgatgtc 233  Q
    ||||||||||||||||||||||||||||||||||    
T  5274855 attgccttaagattttgagtaagagtgtgatgtc 5274888  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 43274872 - 43274823
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtcc 234  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||| |||||    
T  43274872 aggacccataaacctattgtcttaaggttttgagtaagagtgtggtgtcc 43274823  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 45121749 - 45121704
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgat 230  Q
    |||||||||||| |||  |||||||| |||||||||||||||||||    
T  45121749 aggatccataaacctacagccttaaggttttgagtaagagtgtgat 45121704  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 1950278 - 1950234
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtga 229  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||    
T  1950278 aggagccataaatctaatgccttaaggttttgagtaagagtgtga 1950234  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 3058291 - 3058339
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||| ||||    
T  3058291 aggatccataaacccattgccttaaggttttgggtaagagtgtggtgtc 3058339  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 39935048 - 39935000
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||| | ||||||||||  ||||||||||||||||||||||    
T  39935048 aggatccataaacccattgccttaaagttttgagtaagagtgtgatgtc 39935000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 42584915 - 42584867
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||| | |||| |||||||||||||| ||||||||| ||||    
T  42584915 aggatccataaaccaattgtcttaagattttgagaaagagtgtggtgtc 42584867  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 46546415 - 46546371
Alignment:
Q  188 atccataaatctattgccttaagattttgagtaagagtgtgatgt 232  Q
    ||||||||| | ||||||||||| ||||| |||||||||||||||    
T  46546415 atccataaacccattgccttaaggttttgtgtaagagtgtgatgt 46546371  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 14318937 - 14318980
Alignment:
Q  190 ccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||    
T  14318937 ccataaatctattgccttaaggttttgggtaagagtgtggtgtc 14318980  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 41759550 - 41759596
Alignment:
Q  187 gatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  41759550 gatccataaatccattgccttaaggttttgggtaagagtgtggtgtc 41759596  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 45433312 - 45433354
Alignment:
Q  191 cataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||    
T  45433312 cataaacctattgccttaagattttgggtaagagtgtggtgtc 45433354  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 23470 - 23422
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||| ||||    
T  23470 aggacccataaacctattgccttaaggttttgggtaagagtgtggtgtc 23422  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 37533457 - 37533409
Alignment:
Q  185 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 233  Q
    |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  37533457 aggacccataaatccattgccttaaggttttgggtaagagtgtggtgtc 37533409  T

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