View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10205_low_2 (Length: 468)
Name: NF10205_low_2
Description: NF10205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10205_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 45334658 - 45334198
Alignment:
| Q |
1 |
ttgggttatgctgtttctcctatggtattggacttgctcgtctccaagtttgacaagactggtggcaaaagcaaggctattgaatatgacaatttcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45334658 |
ttgggttatgctgtttctcctatggtattggacttgctcgtctccaagtttgacaagactggtggcaaaagcaaggctattgaatatgacaatttcattg |
45334559 |
T |
|
| Q |
101 |
agtatggctttcttttattggatgcaaaattgtttatataattaaaaacgattttgtgttggtgtcttctttttcaaaactacaatatgttattttaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45334558 |
agtatggctttcttttattggatgcaaaattgtttatataattaaaaacgattttgtgttggtgtcttctttttcaaaactacaatatgttattttaact |
45334459 |
T |
|
| Q |
201 |
ataaagccttcgacactctattttcagtaaaaacagaaaattggaaagcaattgtcatgtttttaattctccaatctaccaacaaaagatttgttaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45334458 |
ataaagccttcgacactctattttcagtaaaaacagaaaattggaaagcaattgtcatgtttttaattctccaatctaccaacaaaagatttgttaattt |
45334359 |
T |
|
| Q |
301 |
ttgtcgattattgtttccatttcatgtcaaatttcttcatctaaaatggcagaaacctttagtgaagttgaaattttctctgtatatcagaactatgatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45334358 |
ttgtcgattattgtttccatttcatgtcaaatttcttcatctaaaatggcagaaacctttagtgaagttgaaattttctctgtatatcagaactatgatt |
45334259 |
T |
|
| Q |
401 |
gattgtgtatccttatctgttttgatatcaattctaatgataaattggttctcttcctttg |
461 |
Q |
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| T |
45334258 |
gattgtgtatccttatctgttttgatatcaattctaatgataaattggttctcttcctttg |
45334198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20789531 - 20789421
Alignment:
| Q |
1 |
ttgggttatgctgtttctcctatggtattggacttgctcgtctccaagtttgacaagactggtggcaaaagcaaggctattgaatatgacaatttcattg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| || | ||||||||||||||||| | |
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| T |
20789531 |
ttgggttatgctgtttctcctgtggtattggacttgctcgtctccaagtttgacaaaactggtggcaaaaacaaagccgtcgaatatgacaatttcatcg |
20789432 |
T |
|
| Q |
101 |
agtatggcttt |
111 |
Q |
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||||| ||||| |
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| T |
20789431 |
agtattgcttt |
20789421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 18972147 - 18972087
Alignment:
| Q |
229 |
aaaaacagaaaattggaaagcaattgtcatgtttttaattctccaatctaccaacaaaaga |
289 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||| |||| ||||||| ||||||||||||| |
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| T |
18972147 |
aaaaacagctaattgaaaagcaatagtcatgtttctaatcctccaatttaccaacaaaaga |
18972087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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