View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10205_low_3 (Length: 413)

Name: NF10205_low_3
Description: NF10205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10205_low_3
NF10205_low_3
[»] chr3 (9 HSPs)
chr3 (17-276)||(6896746-6897007)
chr3 (300-393)||(6234770-6234863)
chr3 (343-395)||(6879294-6879346)
chr3 (300-395)||(6852292-6852387)
chr3 (340-393)||(6165635-6165688)
chr3 (333-393)||(6255599-6255659)
chr3 (296-395)||(6594498-6594597)
chr3 (166-225)||(6234461-6234521)
chr3 (339-395)||(6725208-6725264)
[»] scaffold0425 (1 HSPs)
scaffold0425 (300-395)||(14725-14820)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 6896746 - 6897007
Alignment:
Q  17 ctaaataactatttgctatttgtgttaatatgatcctaaacttaagttgtgacaaaattttgacatgacggtacttgtgtccttcctctacnnnnnnnn- 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||             
T  6896746 ctaaataactatttgctatttgtgttaacatgatcctaaacttaagttgtgacaaaattttgacatgatggtacttgtgtccttcctctacttttttttt 6896845  T
Q  116 ----ggggggttgtccatcttgtattgttgctactagtgttaatattgattggctaaaaataatatatctaattgctgtaggacttttttgtttacacaa 211  Q
        |||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  6896846 tttggggggggtgtccatcttgtattgttgcta---gtgttaatattgattggctaaaaataatatatctaattgccgtatgacttttttgtttacacaa 6896942  T
Q  212 gcacatcagatgtaacaccatgttgttaaagtctaactcacctattaacaatgacaaatatgaat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6896943 gcacatcagatgtaacaccatgttgttaaagtctaactcacctattaacaatgacaaatatgaat 6897007  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 393
Target Start/End: Original strand, 6234770 - 6234863
Alignment:
Q  300 tcaacatttaaaacacttatatatctgtaggtagaatgagtaaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaat 393  Q
    |||||| |||||| |||| ||||||  |||||||||| |||||||||||||||| |||||| |||| |||| ||||||||||| ||||||||||    
T  6234770 tcaacaattaaaatacttttatatcaataggtagaataagtaaaatttgaaaataaagaatcccatcagatggttttaaataatttgtgctaat 6234863  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 6879294 - 6879346
Alignment:
Q  343 aatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaatga 395  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  6879294 aatttgaaaatgaagaatgccatgagattgttttaaataatttgtgctaatga 6879346  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 6852387 - 6852292
Alignment:
Q  300 tcaacatttaaaacacttatatatctgtaggtagaatgagtaaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaatga 395  Q
    |||||| ||||||||||| ||||||  ||||| |||  ||||||| |||||||| |||||||||||||||  || |||||||| |||||| |||||    
T  6852387 tcaacaattaaaacacttttatatcaataggtggaacaagtaaaaattgaaaataaagaatgccatgagacggtattaaataatttgtgccaatga 6852292  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 6165635 - 6165688
Alignment:
Q  340 taaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaat 393  Q
    |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||    
T  6165635 taaaatttgaaaataaagaatcccatgagatggttttaaataatttgtgctaat 6165688  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 6255599 - 6255659
Alignment:
Q  333 gaatgagtaaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaat 393  Q
    |||| ||||||||||||||||||||||| ||||  ||| ||||||||||| ||||||||||    
T  6255599 gaataagtaaaatttgaaaatgaagaatcccatcggatggttttaaataatttgtgctaat 6255659  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 6594597 - 6594498
Alignment:
Q  296 gatctcaacatttaaaacacttatatatctgtaggtagaatgagtaaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaatga 395  Q
    |||||| ||| |||||||| || ||||||  ||||| ||||  |||||| |||||||| |||||||||||||||| || ||||| || || |||||||||    
T  6594597 gatctccacaattaaaacagttttatatcaataggtggaatacgtaaaaattgaaaataaagaatgccatgagatggtattaaagaatttttgctaatga 6594498  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 6234461 - 6234521
Alignment:
Q  166 taaaaataatatatctaattgctgt-aggacttttttgtttacacaagcacatcagatgta 225  Q
    |||||| |||||||||||||||| | | |||||||||||||||||| ||| ||||||||||    
T  6234461 taaaaaaaatatatctaattgctatcaagacttttttgtttacacatgcatatcagatgta 6234521  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 6725264 - 6725208
Alignment:
Q  339 gtaaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaatga 395  Q
    |||||| |||||||| |||||||||||||||| || ||||| || ||||||||||||    
T  6725264 gtaaaaattgaaaataaagaatgccatgagatggtattaaagaatttgtgctaatga 6725208  T

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Target: scaffold0425 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 14820 - 14725
Alignment:
Q  300 tcaacatttaaaacacttatatatctgtaggtagaatgagtaaaatttgaaaatgaagaatgccatgagatagttttaaataacttgtgctaatga 395  Q
    |||||| ||||||||| | ||||||  ||||| |||  ||||||| |||||||| |||||||||||||||  || |||||||| ||||||||||||    
T  14820 tcaacaattaaaacacgtttatatcaataggtggaacaagtaaaaattgaaaataaagaatgccatgagacggtattaaataatttgtgctaatga 14725  T

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